Daucus carota (carrot): 108227307
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Entry
108227307 CDS
T05350
Name
(RefSeq) coatomer subunit alpha-1
KO
K05236
coatomer subunit alpha
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dcr04131
]
108227307
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dcr04147
]
108227307
Membrane trafficking [BR:
dcr04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
108227307
Exosome [BR:
dcr04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
108227307
Exosomal proteins of bladder cancer cells
108227307
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WDR55
WD40_CDC20-Fz
Beta-prop_EML_2
TPR_COPA_B
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
Zn_ribbon_19
Motif
Other DBs
NCBI-GeneID:
108227307
NCBI-ProteinID:
XP_017257869
UniProt:
A0A161YC50
LinkDB
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Position
6:complement(16749468..16755269)
Genome browser
AA seq
1216 aa
AA seq
DB search
MLTKFETKSNRVKGLSFHNKRPWILASLHSGVIQLWDYRVGTLIDRFDEHDGPVRGVHFH
NSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW
NWQSRTCISVLTGHNHYVMCALFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILR
LSQMNTDFFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKIWRMNDTKAWE
VDTLRGHMNNVSCVLFHARQDIIVSNSEDKSIRVWDSTKRTGLQTFRREHDRFWILVSHP
EMNLLAAGHDSGVIVFKLERERPAFSVSGDCLYYVKDRFLRFYEYSTQKETQVIPIRRPG
STSLNQGPKTLSYSPTENAVLVCSDLEGGSYELYIIPKDSFGRGDTVQEAKRGLGGSAVF
VARNRFAVLEKTSNQVLVKNLKNEIIKKSPLPVPTDAIFYAGTGNLLCRAEDRVVIFDLQ
QRIILGDLQTSFVRYVVWSNDMENVALLSKHSIVIADKKLAHRCTLHETIRVKSGAWDDN
GVFIYTTLTHIKYCLPNGDSGIVKTLDVPVYITKIFGNTIFCLDRDGKNRPIIIDSTEYV
FKLSLLREKYSQVMTMIRKSDLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNI
QIAVASAKEIDEKDHWYRLGIEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNLDKLSK
MMKIAEVKNDVMGQFHNALYLGDIQERVKILENAGHLPLAYITASVHGLNDTAERLAAEL
GDKVPPLPKGKQSSLLMPPSPIVCSGDWPLLMVTKGILEGGLDNFGKGGQDEDDDVAPNE
DWVEDLDLVDVENIQNEDISMVLDDEETNEDNDGGWDLEDLELPPDLDTPKVSNVRSSIF
ITPSAGMPVSQIWVQKSSLAAEHAAAGNFDTAMRLLTRQLGIRNFAPLKSLFIDLHTGSH
TYLRAFSSAPVIALAIERGWSEAASPNVRSPPALVFSFTQLEDKLKAGYKATTAGKFTEG
LRLFQGILHTIPLIVVDTRREVDEVKELIIIVKEYVLGLQIELKRRELKDNPVRQQELAA
YFTHCNLQLPHLRLALLNAMTVCYKAKNLNTAANFARRLLETNPSAENQAKTARQVLQAA
ERNMHDASQLNYDFRNPFVVCGATYVPIYRGQKDVSCPYCSSRFVPSQEGQICTVCDLAV
VGSDASGLLCCPSQVR
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgttgacgaaattcgagacgaagagtaatcgagtgaagggactgagttttcataacaag
aggccatggatcttagcgagcttgcatagtggagtgattcagctttgggattaccgtgtg
ggaacgctgattgatcgctttgatgagcacgatggacctgttcgcggcgtccatttccat
aattctcagccgctttttgtctctggaggagatgattacaagatcaaggtgtggaattat
aaattgcataggtgtctgtttacccttcttggacatctagattacatccgtacagtccaa
ttccatcatgagtatccttggatcgtgagtgctagcgatgatcagactattaggatctgg
aattggcagtcgcgtacttgtatttctgtgttgacaggacataaccattatgttatgtgt
gctctgtttcatcccaaggaggaccttgtagtatcagcttctttggatcagactgttcga
gtttgggatattggtgctcttaggaagaagactgtttcacctgctgatgacatccttagg
ttgagtcagatgaatacagacttttttggcggcgttgatgctgttgttaagtatgtcctg
gaaggtcatgatcgaggagtcaactgggcttcattccatcctactctccccctcattgtt
tctggagcagatgatcgtcaggttaagatctggagaatgaatgatactaaggcttgggaa
gttgatactttaagagggcacatgaacaatgtgtcctgtgttctgttccatgcaaggcag
gatattattgtttcaaattcagaggataagagtatccgtgtgtgggattctacaaaaagg
actggtctgcaaacatttcgtagagagcatgataggttctggattcttgtgtcccatcct
gagatgaatcttctggcagcaggccatgatagtggtgtgattgttttcaagttggagaga
gaacgtcctgccttctctgtcagtggggattgtctttactatgtgaaagaccgttttctg
cgcttctatgagtactcaactcagaaagaaacccaagttatcccaattcgtaggcctggt
tcgactagcttgaaccaaggacccaagaccctttcttatagccctactgaaaatgcggtt
ttggtctgttcagacttggaagggggatcttatgaactctatataatacccaaagacagt
tttggtagaggcgatacagttcaagaggcaaaaagaggtcttgggggttcagcagtattt
gttgctcgtaacaggtttgctgtgcttgagaagaccagtaaccaagtgttggtgaaaaat
ttaaaaaatgaaataattaagaagagtccccttcctgttcctactgatgcgatattttat
gctggcactggaaacttactatgcagggcagaagatagagttgtgatttttgatcttcaa
caaaggattattttaggtgatcttcaaacttcttttgttaggtatgttgtttggtcaaat
gacatggaaaatgtggccttgttaagcaaacattctattgttattgctgataagaagctt
gcacatcggtgtactcttcacgagacgattcgagttaaaagtggagcttgggatgacaat
ggtgtcttcatttacacaacattgacccacattaagtattgccttcccaatggggatagt
ggaattgtaaagacccttgacgtcccagtatacatcacaaaaatctttggaaacactata
ttttgtttggatcgagatgggaagaaccgtcctatcattattgattcaactgaatatgtg
tttaaactctctttgctgcgggagaaatatagccaggttatgaccatgattagaaaatca
gatctttgcggacaagctatgattgcttatcttcagcaaaagggttttcctgaagttgca
cttcattttgtaaaggatgagcgaactcgttttaatttggcactcgaaagcggtaacatc
cagatagcagtagcttctgctaaagagattgatgagaaggatcactggtacagattgggg
atagaggcccttcgtcaaggtaatgcaggtatcgtggaatatgcatatcagagaacaaag
aattttgaaagactatctttcctctatcttataacaggaaatttggataagctttcaaaa
atgatgaaaattgctgaggttaagaatgatgttatgggtcaattccacaatgccttgtac
ttgggtgatatccaggagcgtgttaagattttggagaatgctggtcatttaccccttgca
tatatcacagcttctgtccatggacttaatgacactgctgaacgtcttgctgctgaattg
ggagataaagttcctcctttgccaaaagggaaacaatcatctcttttaatgcccccaagt
cctatagtgtgcagtggtgattggccattattgatggtcacaaaagggatcttggagggt
ggtcttgacaattttggaaagggtggtcaggatgaagatgatgatgttgccccaaatgaa
gattgggttgaagacctggatctggtggatgttgagaacatacagaatgaggacattagc
atggtacttgatgatgaagaaacaaatgaagacaatgatggaggatgggatcttgaggat
cttgaactaccacctgatcttgacactccgaaagttagcaatgtgcgctcttcaatattc
attactccatctgctggcatgcctgtgagccaaatttgggttcaaaagtcttctcttgct
gctgagcatgctgctgctggtaatttcgacactgcaatgcgtttgctaacccggcaactg
ggaataaggaactttgcacccttaaaatcattatttattgatctccacaccggcagccat
acttatttacgtgcattctcctcggctccagtcatcgcactggcaatcgagaggggctgg
agtgaagcagcaagccccaatgtacggagcccacctgcactggtgttcagctttacacag
ttggaagacaagctcaaggcaggatacaaagccacaactgcagggaaatttactgaagga
ctgaggcttttccagggaattcttcatactattccgctgattgttgttgatactcgtaga
gaggtggatgaagtaaaggaattaatcatcattgtaaaagaatatgttctcggtttacag
atagaactcaagagaagggaattgaaggacaatccagttcgtcagcaagagcttgcagcc
tacttcactcattgtaatcttcagctgcctcacttgagactcgctttattgaatgccatg
actgtttgctacaaggcaaaaaatttaaacacagcagctaattttgctaggcgactccta
gagaccaatccaagtgctgaaaaccaagccaaaacagcccgccaagttttgcaggctgct
gagaggaacatgcatgatgcctcccagctgaattatgacttcagaaatccatttgtggta
tgtggagcaacatatgttccaatatatcggggacaaaaggatgtaagttgcccgtactgc
agctcacgctttgtgccatcccaggaagggcagatttgtactgtttgtgacctagctgtt
gttggttctgatgcttctggtttactctgctgtccttcacaagtcagataa
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integrated database retrieval system
