Daucus carota (carrot): 108227325
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Entry
108227325 CDS
T05350
Name
(RefSeq) endoribonuclease Dicer homolog 1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dcr03036
]
108227325
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
108227325
microRNA pathway
RISC loading complex
108227325
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
PAZ
dsrm
DND1_DSRM
Helicase_C
DEAD
ResIII
Dicer_dsRBD
Dicer_PBD
SNF2-rel_dom
SWI2_SNF2
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
108227325
NCBI-ProteinID:
XP_063935505
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All DBs
Position
6:complement(20602766..20619311)
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AA seq
1964 aa
AA seq
DB search
MDDNGDEASNSNRKIASSSYWLDACEEDMCCDDLITFPSDFHPPPPPVSSSLDQQPEDSV
LDPCFFGGIDGILDSIRKGAGFTPPPPQSQFNNELEMEEVDKSFHSNDETIIHLNHSFLP
DDNALATSKALPVKSTHESYSSSVLNNDHNKVSSTHPPDVNCVKWQTDEAHHRSSGIIHR
ADRIDKKPQLHHQQDHYLARKNKNNNHNPRERKRSRDWEESDRRDRSRIRRSERNNGSVN
GKKDFRENRGYWERDRSKGSGEMVYRPGSWEPDQTREFKALSNKTHDNSGEVKKAIEPKE
KVIEEHARKYQLDVLQQAENRNTIAFLETGAGKTLIAVLLIKSLCSRLQKINKKFLAVFL
VPKVPLVYQQAEVIRDRTGYQVGHYCGEMGQDFWDARRWQHEFETKQVLVMTAQILLNIL
RHSIIKMESINLLILDECHHAVKKHPYSLVMSEFYHTTPKMKRPSVFGMTASPVNLKGVS
SQEDCAIKIRNLETKLDSIVCTIKDRKELEKHVPMPSETVVLYDKAASLCYLHEQIKQME
VAVEQAALSSSRRSKWQFMGARDAGAKEQLRQVYGVSERTESDGAANLIQKLRAINYALG
ELGQWCAFKVAQSFLTALQNDERANYQLDVKFQETYLDKVVSLLQCQLSEGAVPDNLEDA
LKNGVDVGGLDEEVEEGELPASHVVSGGEHVDVIIGGAVADGKVTPKVQSLVKILHRYQS
TGDFRAIIFVERVVTALVLPKVFAELPSLSFIRSASLIGHNNSHEMRTSQMQDTISKFRD
GRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMAERGNLS
HEAFLRNARNSEETLRKEAIERTDLSHLKDNSRLISADSSPGSFYQVESTGAIVSLNSAV
GLIHFYCSQLPSDRYSILRPEFIMERHEKLGGPPEYSCRLQLPCNAPFENLEGPICISMR
VAQQAVCLLACKKLHEMGAFTDMLLPDKGSGGDGEKPEQNDEDALPGTARHREFYPEGIA
NILEGQWILSGTDGRYSSELVHLYMYALRCSNVGSSKDNHITNVSEFAVIFGKELDAEVL
SMSMDLFVARTMITKASLVFQGPIEITENQLVSLKSFHVRLMSIVLDVDVEPATTPWDSA
KAYLFVPLLSNKCRNLGEEIDWNLVEQIVKTDAWNNPLQRARPDVYLGTNERTLGGDRRE
YGFGKLRHGMAFGQKYHPTYGIRGAVAQFDVVKASGLLPNQGIVEMPNHMNLTKVKLMMA
DSYTTPEDLVGRIVTAAHSGKRFYVDSVRSDMTAENSFPRKEGYLGPLEYSSYADYYKQK
YGVDLKCKQQPLLRCRGVSYCKNLLSPRFVHSEAHDGESEEALDKTYYVYLPPELCFVHP
LPGSLVRGAQRLPSIMRRVESMLLAVQLKNMIGYSVPSLKILEALTAASCQEPFCYERAE
LLGDAYLKWVVSRYLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALNKGLQSYIQADRFAP
SRWSAPGVPPVFDEDTKEEDLPFPDQERVLDTYLSGIDSSKGISEDDEMEDGELESDLSS
YRVLSSKTLADVVEALIGVYYVEGGKIAANHLMKWVGIQVDFDVKELDFSSKVSHVSDSV
LKSVNFEALEGALHFKFKDRGLLIEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF
FTYTDLPPGRLTDLRAAAVNNENFARVAVKHNLHVHLRHGSNALEKQIRDFVKEVQNELL
KQGFNCFGLGDCKAPKVLGDIVESIAGSIFLDSGHDTGVVWQVFKPLLEPMVTPETLPMH
PVRELQERCQQQAEGLEYKATRSGNVATVEVYIDGVQVGAAQNQQKKMAQKLAARNALIA
LKEKETIEADEKRDEDGKKGNGSHTFTRQTLNDICLRRNWPMPSYRCVNEGGPAHAKKFT
FAVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLELLNNWYA
NT seq
5895 nt
NT seq
+upstream
nt +downstream
nt
atggatgataatggtgatgaagctagtaatagtaataggaagatagcatcatcctcttac
tggctagatgcttgcgaggaggacatgtgttgtgatgatctcattacttttcctagtgat
tttcatcctccccctccacctgtctcttcttctttagaccagcaaccagaagattccgtt
ctcgatccttgcttctttggtggcatagatgggattcttgacagtattaggaaaggtgct
ggctttacccctcctccccctcaatcccaattcaacaatgaattggagatggaggaggtg
gacaagtcgtttcacagtaatgatgaaaccatcatacacttaaatcacagcttcttaccc
gatgataatgcacttgcaacaagcaaggcactgccggttaaatcaacacatgaaagttat
tcttcttctgtactaaacaatgaccataataaagtttcttcaactcatcccccagatgtg
aattgtgtcaagtggcagactgatgaagctcaccaccgttcctctggtatcatccaccgc
gcggacagaattgacaaaaagccccagcttcaccatcagcaggatcactacctggccaga
aagaataaaaataataaccacaatcctagagagaggaaaaggtcccgtgactgggaagaa
tctgataggagagacaggtctcgaattcggagaagtgaaagaaacaatggatctgttaat
ggcaaaaaggattttagggagaacaggggttattgggaaagggatcggtccaagggttct
ggtgagatggtttatcgccctggttcatgggaacccgatcaaacaagagagtttaaggcg
ctctcaaataaaacacatgacaatagtggagaagtcaagaaagctatagagcccaaagag
aaagttatagaggagcatgcccgcaagtaccagttagatgttcttcaacaagctgaaaat
aggaatactatagcttttttggaaactggggccggtaagaccctcattgctgtactactt
atcaaaagcctttgcagccgactgcaaaagataaacaagaaatttcttgcagtatttttg
gttcccaaggttcctctggtttatcagcaagctgaggtcattcgtgaccgaactgggtac
caagttggtcattactgtggtgagatgggtcaagatttctgggatgcacgtaggtggcag
catgaatttgaaacaaaacaggttttggtgatgacagctcagatccttttgaatatttta
aggcacagcataataaagatggagtctattaatctcttgattttggacgagtgtcatcat
gctgtaaagaaacatccctattcattagtgatgtctgagttctaccacacaacacccaag
atgaagaggccatcagtttttgggatgactgcttctcctgttaatttgaagggggtatcc
agccaagaggattgtgcgataaaaatacgtaaccttgaaaccaaattagattccattgtg
tgcaccataaaagaccgcaaggagctggaaaaacatgtaccgatgccttcagaaactgta
gtgctgtacgacaaagcagcaagtttgtgctacctccatgaacaaataaaacaaatggaa
gtagcagttgaacaagctgctctatcaagttccagaagaagtaaatggcaatttatggga
gcaagagatgccggggccaaggaacaacttcgccaagtttatggcgtctctgaaagaaca
gagagtgatggagctgcaaatttgattcaaaagcttagagctataaattatgcacttggt
gaactcgggcagtggtgtgcttttaaggtcgcacaatcttttttgacagctttacaaaat
gacgaaagggcaaactaccaacttgatgtgaaattccaggaaacttatttggacaaagtc
gtctctctgttgcagtgccagctatcagagggtgctgtaccagataacttggaagatgca
cttaaaaatggagtggatgtaggtggccttgatgaggaggtagaagaaggagagcttcct
gcaagtcatgttgtctctggtggggagcatgtagacgtgattataggaggtgctgtggct
gatggaaaagtaaccccaaaggtccagtcgttagttaaaatacttcatagatatcagagc
actggcgattttcgtgcaatcatctttgttgagcgtgtagttacagccttggttcttcca
aaggtattcgcagagcttccatctttaagttttatcaggtcagcaagtttaattggacat
aacaatagtcacgagatgaggacttcacagatgcaggatactatttccaaatttcgggat
ggtcgtgtgacattgttagttgccaccagtgttgctgaggaaggccttgatattcggcaa
tgtaatgttgtcattcgatttgaccttgccaaaacggttttggcgtacatccaatcacgg
gggcgtgctagaaaacccggatcagattacatattgatggctgagagaggaaacttgtca
cacgaagcatttctacggaatgccagaaacagtgaggagactttacggaaagaagcaatc
gagagaactgatctcagtcatctcaaagacaactctagattaatttctgctgactcctcc
ccaggttcattctaccaagtggaatctaccggtgccatcgtaagcttgaattctgctgtt
gggcttatccatttttactgctcccaactgccaagtgacaggtactcaatacttcgtcca
gaattcatcatggagcgtcatgagaagctaggaggtccccctgaatattcttgcaggctt
caactcccctgcaatgcaccatttgaaaaccttgagggccctatttgcatctcaatgcgt
gttgcacaacaggccgtttgcctgcttgcttgcaagaagctccacgagatgggggcattt
actgatatgctcttacccgacaagggaagtggtggagatggcgaaaaaccagaacaaaat
gatgaagatgctcttcctggaactgctaggcatagagaattctaccctgaaggcatagct
aatattcttgagggacaatggatcttatccggcactgatggccgttacagttcagaattg
gttcacctttatatgtacgctttaagatgttcaaatgttggttcctcaaaagataatcat
ataaccaatgtttctgagtttgctgtgattttcggcaaagagctggatgcagaggtgtta
tcgatgtcaatggatctctttgttgctcgaaccatgataaccaaggcatctcttgtgttt
caagggcctatagaaatcacagagaaccagttggtatctctgaagagctttcatgtaaga
ctaatgagcattgttctggatgtggatgttgaaccggctaccaccccatgggattctgcc
aaggcatatctttttgtcccattattgagcaacaagtgtaggaatctaggtgaagagatc
gactggaatctagtagaacaaattgttaagacagatgcctggaacaatccccttcagaga
gctcggccagatgtttaccttggtacaaatgagcgaacacttggaggagatcgaagggaa
tatggttttgggaagttacgccatggaatggcatttggacagaaatatcatcccacctat
ggtataaggggagctgttgcacaatttgatgttgtgaaagcatcaggcctacttcctaat
caaggtattgttgaaatgccaaatcatatgaatctcaccaaggtgaagttgatgatggct
gattcgtacaccactccagaagatctggttggaagaattgttactgctgctcattccggg
aaaaggttttatgtcgattctgtacgttctgatatgacagcggagaactcattcccaagg
aaagaaggatatcttggtcctctagaatacagctcatatgctgattattataagcaaaag
tatggagttgacttgaagtgtaagcaacaacctctgctaagatgtcgaggtgtttcatac
tgcaagaatcttctctccccgcgatttgtacattctgaagctcatgatggtgaatctgaa
gaggctttggacaaaacatactatgtttacctccctcccgagttatgtttcgtacatcct
cttcctggttcactagttcgaggtgctcaaaggttgccctcaataatgagaagagtagag
agcatgctgcttgcagtccagctcaagaatatgattggctattccgttccttctttaaaa
atcttggaagccttgactgcagcttcttgtcaggagcctttttgctatgaaagagcagag
ctacttggagatgcttatctaaaatgggtagtgagtcggtacctatttcttaagtacccc
caaaagcatgaaggccagttaactaggatgagacaacagatggtgagtaacatggtactg
taccaatttgcattaaacaagggacttcagtcatatattcaagcagatcgatttgctcca
tcaagatggtctgctccgggggtaccgcccgtgtttgatgaggatactaaggaagaagac
ctgccctttcctgatcaagaaagggtgctggatacatatttatcaggaatagactcctct
aaaggtatttctgaagatgatgaaatggaagatggtgaactcgagagtgatttgagctct
taccgagttctctctagcaaaacactggctgatgttgttgaagcactaatcggagtctat
tatgttgaaggtgggaagattgctgcaaaccatctcatgaaatgggtcggtatacaagta
gattttgatgtcaaagagttagatttctcaagtaaagtgagccatgtttcagatagtgta
cttaagagtgtaaactttgaagctttggaaggtgcattacatttcaagtttaaggacaga
ggcctgttaatcgaagctattactcatgcttcacggccatcttctggagtatcttgttat
cagcggttggaatttgtcggagatgctgttctagatcatctaattacaaggcacttgttc
tttacgtatacagatctcccacctggacgtttaaccgacttgcgagctgctgctgtgaac
aatgaaaactttgctcgtgttgcagtcaaacataatcttcatgtgcaccttcgtcacggt
tcaaatgcgcttgaaaagcagatacgggactttgtgaaagaggttcaaaatgagctatta
aagcaaggattcaactgtttcggcttaggtgattgcaaagcaccaaaagttctaggcgac
attgttgagtcaattgctggttccattttcttagatagcggacatgatactggagttgtt
tggcaggtcttcaagccattattagaaccaatggtcactccagaaacactccccatgcat
ccagtccgagaactgcaagaaaggtgccagcaacaggctgaaggtctggagtacaaagct
actcgaagtggaaatgtagcaactgttgaagtttatattgatggggtccaggttggggct
gctcagaatcagcaaaagaagatggcacaaaaattagctgccaggaatgcacttatcgca
ctgaaggaaaaagaaacgattgaagctgacgagaaaagagacgaagatgggaaaaagggg
aatggaagccatacatttactaggcagacattaaatgatatatgcttgcgcagaaattgg
ccgatgccttcgtatcggtgtgttaatgagggtggcccagctcatgctaaaaagtttaca
tttgctgttcgggtgaacacttcagacaggggatggactgatgaatgtataggagagccc
atgccaagtgtcaagaaagcgaaagattcagctgctgttcttctcttggaacttttaaac
aattggtatgcataa
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integrated database retrieval system
