Daucus carota (carrot): 108227398
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Entry
108227398 CDS
T05350
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 7
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dcr03009
]
108227398
03036 Chromosome and associated proteins [BR:
dcr03036
]
108227398
Enzymes [BR:
dcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108227398
Ribosome biogenesis [BR:
dcr03009
]
Eukaryotic type
Pre-60S particles
Helicases
108227398
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
108227398
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
ResIII
FlpD
Motif
Other DBs
NCBI-GeneID:
108227398
NCBI-ProteinID:
XP_017258007
LinkDB
All DBs
Position
6:37396124..37401329
Genome browser
AA seq
694 aa
AA seq
DB search
MPSLALSGNMSPEILKKEKKKKMKDAMETDSPIENKSVKKEKKKKSKKSDSDSEEFVFDD
SEEKSKKKEKKEKKRKVIEDEEEDRSDVSSGEEKSRKKVKKMKVEEEVKEENPNAVANFR
ISEPLRNKLRENGIEALFPIQAMTFDTILDGTDLVGRARTGQGKTLAFVLPILESLTNGA
LKTSRKTGYGRSPSVLVLLPTRELSTQVAADFEVYGGSLGLNSVCLYGGAPYNNQQIQLK
RGVDIVVGTPGRIKDHIERGNVDFSSLKFRVLDEADEMLRMGFVEDVEYILGKVEDTKKV
QTLLFSATLPIWVKQIATRFLKPDKKTADLVGNEKMKASASVRHIVIPCSSSARVQLIPD
IIRCYSSGGRTIIFTETKDDASQLAGILPGARALHGDIQQATREVTLKGFRSGKFMALVA
TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGKTGVAVMLYDPRRSNFSRIER
ESGVKFEHLAAPQPTDIATAAGLEAVEAINEISDSVIPVFKSAAEELLSTSGLSPVELLA
KALAKTTGYTEIKSRSLLTSMENFTTVLLEAGRPIYTPSVAFSILRQFLPEQKVDTVKGL
ALTADGRGAVFDVSAEDLDIFLAGQENAAGVSLTVVKELPELQEKDRSQRGGRFGGGRGG
FGGGRFSGGRGGGFNDRRNDRFSRGRGGGRNSRW
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgccttctctagcactctccggcaacatgtcgcctgagattctcaagaaagagaagaag
aagaagatgaaagacgccatggaaacagactctcctatcgagaacaagagcgtgaagaag
gagaagaagaagaagagcaagaagagcgattctgattccgaggagtttgtgttcgatgat
tcggaggagaagagcaagaagaaggagaagaaggagaagaagcggaaggtgattgaggat
gaggaggaggataggagtgatgtgagctcgggggaggagaagagtaggaagaaggtgaag
aagatgaaggtggaggaggaggtgaaggaggagaatccgaatgcggtggcgaattttagg
atttcggagccgttgaggaataagttgagggagaatgggattgaggcgttgtttccaatt
caggcgatgacgtttgatacgattcttgatgggactgatttagttgggagagctcggact
ggtcagggtaaaaccttggcgtttgtgttacccatattggagtccttaacaaacggagcc
ttaaaaacatctcgaaagactggttatgggagatctccaagtgtactcgtgctattaccc
acaagggagttgtcaacacaggttgctgcagatttcgaagtgtatggtgggtctttgggg
ctaaattcagtctgtctgtatggtggagcaccctacaacaatcagcaaatacagctgaag
agaggggttgatatagtcgtgggaacacctggtcgtataaaggatcacattgaaagggga
aatgttgattttagttcattaaagtttcgtgtccttgacgaagctgatgaaatgctgagg
atgggttttgttgaagatgttgaatatattctaggtaaagtagaagacacaaagaaagtt
caaacactactatttagcgcgacattgccaatttgggtgaagcagattgctacaaggttt
ttgaagccagataagaaaactgcagatcttgttggtaatgaaaaaatgaaggctagtgca
agtgtaagacacattgtcattccctgctcaagttctgccagagtacagcttattccagat
attattcgttgttatagcagtgggggccggacaataatttttacggaaactaaagacgat
gcttcccagctagctggcatattacccggagcacgtgctttgcatggggacattcaacag
gccacacgtgaggttacactaaagggattcagatcaggtaaatttatggctttggtggcc
accaatgtggcagcacggggactagatatcaacgatgtacagttgatcattcagtgtgaa
ccacctcgtgatgtagaagcatatattcaccgatctggacggacgggtagagcagggaaa
acgggtgttgctgttatgctttatgatccaaggaggtcaaacttttcccggatagaaaga
gaatccggcgtgaagttcgagcatttggctgctcctcagcctactgatattgctacagct
gctggtttagaagctgtagaagcaatcaacgaaatctctgatagtgtaattccggtcttc
aagtctgctgcggaggagttgttgagtacatctggtctgtcaccagtagaacttctggca
aaggcacttgccaaaaccaccggttatactgagatcaagagcaggtcacttctcacttcc
atggagaacttcactacagtacttcttgaggctggaaggcccatttacacaccatctgtt
gcttttagtatcttgcggcagttcttaccagaacagaaagttgataccgtcaagggcctt
gctcttacagccgatgggagaggagctgtatttgacgtgtctgcagaagatttggacata
tttcttgctggtcaagaaaatgctgctggtgtgagtttaactgtggtgaaagaactgcca
gagttgcaagagaaggatcggtcccaaagggggggaagattcggagggggacgtggtggt
tttggtggaggcaggttctcaggaggaagaggtggtgggtttaatgatagaagaaatgac
agattttctcgagggagaggtggcggtagaaacagcagatggtga
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