Daucus carota (carrot): 108227407
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Entry
108227407 CDS
T05350
Name
(RefSeq) ATP-dependent RNA helicase-like protein DB10
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108227407
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dcr03041
]
108227407
03009 Ribosome biogenesis [BR:
dcr03009
]
108227407
Enzymes [BR:
dcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108227407
Spliceosome [BR:
dcr03041
]
Complex A
U1 snRNP components
U1 related factors
108227407
Complex B
108227407
Ribosome biogenesis [BR:
dcr03009
]
Eukaryotic type
Pre-60S particles
Helicases
108227407
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
108227407
NCBI-ProteinID:
XP_017258019
UniProt:
A0AAF0XB83
LinkDB
All DBs
Position
6:complement(24566329..24571887)
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AA seq
555 aa
AA seq
DB search
MAVVYAPEDPTLPKPWKGLVDSTTGALYYWNQETNVTQYEKPGDNSTIDDDERYNRVSNG
GSKIDSGAGTQQSRRVGPAVENGASSESYQQRNEITVSGKDVPMPMTSFEAIGLPSEILR
ELLQAGFPAPTPIQAQSWPIALQNRDIVAIAKTGSGKTLGYLIPAFMHLKRVRKNPQLGP
TVLVLSPTRELATQIQDEAVKFGRSARISCTCLYGGAPKGPQLRDLSRGVDIVVATPGRL
NDILEMRRVSLSQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPKEVRK
IAADLLVNPVQVNIGNVNELVANKSITQHVEIVSSMEKQRRVEQIVRSQEQGSKIIIFCS
TKKMCDQLTRSLSRQFGTAAIHGDKSQGERDYVLNQFRTGRCPVLVATDVAARGLDIKDI
RVVINYDFPNGVEDYVHRIGRTGRAGASGIAYTFLGDKDAKHAADLIKVLEGANQRVPNE
VRGMVSRGGGFGRAKRQWGSGGRDGGRGGNYDSGFGGRAGWGNGSRDSDRSAPTNYHKRF
HEGAVGGSVKRSRVE
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atggccgttgtttatgcacctgaagatcctactcttcctaagccatggaaaggtttggtt
gacagtaccactggggctctttactactggaatcaagagactaatgtcacgcaatatgag
aagcctggtgataacagtactattgatgatgatgaaagatataatagggttagtaatggt
ggttcaaaaattgattctggagcagggactcagcagagtcgcagggtagggccagctgtg
gaaaatggtgcatcttctgagtcttatcaacaacgtaatgagatcactgtttctggaaaa
gatgtacccatgcctatgacatcatttgaagcaattggcttaccttctgagattcttagg
gagttgctccaggctgggttccctgcccctactccgatacaggcacagtcgtggccaatt
gctcttcaaaatcgcgacatagtggcaattgcaaagactggttcagggaagacgttgggc
tacctgattccagcctttatgcatctgaagcgagttcgtaaaaatccccaattgggccca
acagtgttggttttgtcaccaacgagagagttggcgacacaaattcaagatgaagctgtg
aagtttgggagatcagcaagaatatcttgcacgtgtttgtatggaggagccccaaagggt
ccacaactaagggacttgagcagaggagtggatattgttgttgccactcctggccgtttg
aatgatatccttgaaatgagaagggtgagcctcagtcaagtttcgtacttagttctggat
gaggcagaccgcatgctggacatgggatttgaaccacaaattaggaagattgtgaaggag
gtcccagctcgccgacaaacactcatgtacactgcaacatggccgaaagaggtccggaag
attgctgctgatttattagttaatccagtccaagttaatattggaaatgttaatgaactt
gttgcaaacaagtctatcacccagcatgtggagatcgtctcatcaatggaaaaacaaaga
cgggttgagcagatagtgagatctcaagaacaaggatcgaaaattattatattctgctca
accaagaagatgtgtgatcagttaacccgcagcctcagtcggcagtttggaactgcagcc
attcatggggacaaatctcagggtgagagggactatgtgttaaatcagtttcgcacaggg
agatgtccagttcttgttgctactgatgttgcagctcgtgggttggacatcaaagacatc
agggtggtgatcaactatgacttccccaatggggtagaggattatgttcacaggattggt
aggactggtagggctggtgccagtggaatagcttatacctttttaggtgataaggatgca
aagcatgctgctgatctcattaaagttttggaaggagcgaatcaacgtgttccaaatgaa
gttaggggtatggtttctcgtggtggtgggtttggaagagctaagcgtcagtggggttct
ggtgggcgtgatggaggccgtggtggaaattatgattctggttttggtggaagggctggt
tggggaaatggctcacgagacagtgataggtctgctcccacaaactaccataagagattt
catgagggtgcagttggtggctctgtaaagcgtagtcgggtggagtga
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