Daucus carota (carrot): 108227463
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Entry
108227463 CDS
T05350
Name
(RefSeq) uncharacterized protein LOC108227463
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108227463
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dcr03021
]
108227463
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108227463
Transcription machinery [BR:
dcr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108227463
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
108227463
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf-C2H2_4
zf-C2H2
Motif
Other DBs
NCBI-GeneID:
108227463
NCBI-ProteinID:
XP_017258098
LinkDB
All DBs
Position
6:32333655..32342383
Genome browser
AA seq
1038 aa
AA seq
DB search
MEMENSRRSFDRSREIGLKRPRLEEQVVSRNSNGRGFAQSQPESRVRDVEGSGNDTSIQE
LASQYRTALAELTFNSKPIITNLTIIAGESLHAAKAIASIICSNILEVPTEQKLPSLYLL
DSIVKNIGRDYIKYFAPRLPEVFCKAYRQVDPAVHPGMRHLFGTWRNVFPPQFLQLIEKE
LGFPPAVSSSASGTAKPGSQALRPAQSIHVNPKYLEARQNQQSSKVRGTITDINGSHGNS
PDEMEKPHRGTSVNAARQRADPRLKMHNIQHPPKDAGTGSFQQNSLEFGAYDINSELARH
SASGIKKTSDRATEQVLDRAWYGSGSSIADTTSSRMNSSDVKGGRTSYLTSESANRDLNL
QNAQNLVSGRSSIGIDSWKNSEEEEYTWDDVNSRPTSYGVNRKSKRDPRLMDESERLDAQ
STISKPQTLHGIGSSVDKEASSATLLSEQRNQIAFGTRAPSTGQRGALGLGYPGSSQPSS
GYSAGYPASLSGLSTSSNSMARTSFPVPGSSGSVVQQRYTGEAASPSGQSPLHQHPSSPY
ISKHQSSEEPLQTQAPPHADVELHRRFPQNSPIPAKTITQNIHRGSTQNLQSPNLQGSSY
ISSTQQRHHIPVVQKPLSDPIKYDPSAPSNKALAPQVSTVENPLMVKSSSVPPSHLAPQI
PGQLSASHLLTAVMNSGILGKNSVIGDIPKTSSQNAIALSSQTSSRPPQPSGVSPTKSEV
KVALATNAVPLSHESTFITSTQREKERPPLPHGPPPSSTVSSALEQTATNPMSNLLNTLM
AKGLISASKTESTAPPQIIADPCNQIPGIVTTMVSSTLTVSSAIPPSSTCDKLSESKPTT
KNPVSLDASSFNDFKNHIGFEFKPEVIRVCHPSVIDELLHDLPHQCSICGLQVKLKESLD
RHMEWHTLKKAESGCRRWYISSLEWIQEKVSADEDVKGVSDDELENDGLLMVPADENQCV
CVLCGELFEDIYNKNMDQWMFKEAVYLTLSAQTVVTSLTGEKGPIVHAKGPIVHANCISE
SSLRDLDLANDVKVERVV
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggagaattcacgtagatcattcgatagatcgagagagatagggctgaaaaga
cctaggttagaggagcaagttgtgagtcgtaattcaaatggacgtggttttgctcaatcg
cagccggaatcgagagtcagagatgttgaaggtagtggtaatgatacgtcgattcaggag
ttagctagtcagtacaggactgcgttggcggagctcaccttcaattcgaaaccgattatt
actaatctgactattattgctggagaaagcttgcacgctgccaaggcgattgcttcgatt
atctgctcaaacattctcgaggttccaaccgagcaaaaactcccatctctatatctgcta
gacagtattgtgaaaaacattgggagggattacataaagtactttgctccaagactccca
gaggtcttctgcaaggcatatagacaagttgatccagcagtacaccctggcatgcggcat
ctatttggaacctggagaaatgtatttccacctcaatttcttcagttgattgagaaagaa
cttgggtttccacctgctgtcagcagttcagcatcagggacagctaagcctggttcacag
gcactgcgtccagctcaaagtatacatgtaaatccaaagtacttggaggcaaggcagaat
cagcagtcaagcaaggtaagaggaacaatcacagacataaatgggagccatgggaattca
cccgatgagatggagaaaccgcacagaggaaccagcgttaatgctgcaagacaacgagct
gatcctcgtcttaaaatgcataatattcagcatcctccaaaagatgcaggaactgggtct
tttcagcaaaatagtttagaatttggtgcatatgatattaatagtgagcttgcaaggcat
tcagcttctgggattaaaaaaaccagtgatagggccacagagcaagtacttgaccgggct
tggtatggatctggcagcagtattgctgacacaacatccagcaggatgaatagttccgat
gtcaagggtgggcgtacaagttatttaacctctgaatctgcaaacagagacctgaacttg
cagaatgcgcagaaccttgttagtggtagaagcagcattgggattgatagttggaagaac
tctgaagaagaggagtacacatgggatgatgtgaattctagaccaacaagttatggtgtc
aatcgtaagtcaaagagagatcctaggttgatggatgagtctgagagactggatgcccag
agcactatttcaaagcctcaaactctacatggaattggatcaagtgttgacaaagaagct
tccagtgctacattgctgtctgaacagagaaaccaaattgcttttggaactcgagctcct
tcaactgggcagcggggagcacttgggttaggctatcctggttccagtcaacctagttca
gggtattctgcaggttatcctgcctctttgagtgggttgtcaacaagttcaaattccatg
gctaggacgtctttcccggttccagggtcctctggatcagtagtacaacaaagatacact
ggagaggctgcatcaccatctggacaatcaccattgcaccaacatccttcctcaccttat
atctccaaacatcaatccagcgaagaacctttgcaaactcaagcaccgccacatgctgac
gtcgaactgcatagacggtttcctcaaaactctcctatacctgcgaagacaataacccag
aacattcatcgagggagcacacagaatttgcaatccccaaatttacagggatcctcttac
ataagttcgactcaacaaaggcatcatattcctgttgtgcaaaaacctctgtctgatcct
ataaaatatgatccttctgctccatccaacaaagcattagcacctcaggtttcaactgtg
gagaatcccttaatggtgaagtcttcatctgttcctcctagtcatcttgctccgcaaatt
ccagggcagttgagtgcgagtcatttattgactgctgttatgaatagtggaatacttggg
aaaaattctgtcattggtgacatacctaaaactagcagtcagaatgctattgcattgtct
tctcaaacatcttcacggcctcctcaacccagtggcgtttctccgaccaaatcggaggtc
aaagttgctttagcaactaatgcagtcccattatcccatgaaagcacatttattacctct
acgcagagagaaaaagaacgtcccccactgccgcatgggcctccaccctcttcaactgtt
agtagtgccttggaacagactgcaactaatcctatgtcaaatcttttaaatacattaatg
gcgaagggcttgatttctgcatcaaaaacagaatcaactgctccacctcagattattgct
gatccctgtaatcaaattccaggaattgttactactatggtgagttccactctcacagtt
tcgtcagctattccaccctcatctacttgtgacaagctttctgagtcgaagcccaccact
aaaaacccagttagcttggatgcatctagcttcaatgacttcaaaaaccatattgggttt
gagtttaaaccagaagtgattcgggtgtgtcatccttctgtaattgatgagctccttcat
gatcttccacaccagtgcagtatatgtggtcttcaagtcaaacttaaagaaagtttagat
agacatatggagtggcacacacttaaaaaagctgaatcaggttgccggagatggtatatc
agttctcttgagtggattcaggaaaaagtttctgctgatgaagatgtgaagggggtttct
gatgatgaattggagaatgatggtttgttgatggtccctgccgatgaaaaccaatgcgta
tgtgtgttatgtggtgagctgtttgaagatatttataataagaatatggatcaatggatg
ttcaaagaagctgtttatttgactctttcagctcaaacagtggtaacaagtcttacagga
gaaaagggtcctattgttcatgcaaagggtcctattgttcatgcaaactgtatatcagaa
agttctcttcgtgatttggatctagccaatgatgtaaaagtggaaagggttgtgtag
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integrated database retrieval system
