Daucus carota (carrot): 108227465
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Entry
108227465 CDS
T05350
Name
(RefSeq) pseudouridine-5'-phosphate glycosidase isoform X1
KO
K16329
pseudouridylate synthase [EC:
4.2.1.70
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr00240
Pyrimidine metabolism
dcr01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09100 Metabolism
09104 Nucleotide metabolism
00240 Pyrimidine metabolism
108227465
Enzymes [BR:
dcr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.70 pseudouridylate synthase
108227465
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Gene cluster
GFIT
Motif
Pfam:
Indigoidine_A
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
108227465
NCBI-ProteinID:
XP_017258114
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Position
1:complement(31059156..31078761)
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AA seq
330 aa
AA seq
DB search
MAPTQSTTNKGANFNCASGLVKISPAVSQALSQGKAVVALESTIISHGMPYPQNLKTAKE
VEAIVRENGAEPATIAILDGMPCVGLTSEELERLATLGTKCQKTARRDIAHVVATKGNGA
TTVSATMIFASMVGIPVFVTGGIGGVHRYGENTMDISSDLTELGRTPVAVISAGVKSILD
IPRTLEYLETQGVCVTAYKTDEFPAFFSGQSSCKAPCRVNSPEDCARLIDANLNLQLGAG
ILIAVPIPEKHSAVGSVIESAIQRSLKEARDKNITGNAQTPFLLARVNELTGGASLASNI
ALVKNNALVGAQIATCLAQLRQPKVTCSKL
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atggcgcctacacaatctactaccaacaagggtgccaattttaattgtgcatcagggctg
gtgaagatttcccccgctgtttctcaagctttgtcacaagggaaagcagttgttgctcta
gagtccaccataatatctcatggaatgccttatcctcaaaatttaaagacagcgaaagag
gtggaggctattgtaagggaaaatggagctgaaccagctacgattgcaattttagatggc
atgccatgtgtaggcctgacttcagaggagttggagaggctggctactctgggtaccaaa
tgtcaaaagacagctcgcagggacattgctcatgttgtagctactaaagggaatggtgca
acaactgtttctgcaactatgatctttgcttctatggttggcattcctgtgtttgttact
ggaggtattggaggagtacacagatatggagaaaataccatggatatatcttctgatctt
acagagcttggaagaactcctgtagctgtaatatctgctggcgtaaaatcaatattagat
attcctagaacactcgagtatctggaaactcaaggagtttgcgttactgcttataagact
gatgagttccccgcttttttttctggacaaagtagctgcaaggcaccttgcagagtaaat
tcacctgaagactgtgcacggcttattgatgcaaacttgaatcttcagcttggtgccggt
atattgatagctgttccaatccctgagaaacactctgctgtaggaagcgtaattgaatct
gcaatacaaagatcccttaaagaagctagggataaaaacataacaggcaatgctcagact
cctttcttgcttgcaagagtgaatgaactgactggaggggcctctttggcttcaaacatt
gcacttgtgaaaaataatgcacttgtgggagctcaaatagccacctgtcttgctcagctt
cgacaacctaaagtaacttgttcgaagttgtag
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