Daucus carota (carrot): 108227584
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Entry
108227584 CDS
T05350
Name
(RefSeq) cell division control protein 48 homolog E
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
dcr
Daucus carota (carrot)
Pathway
dcr04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
108227584
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108227584
03009 Ribosome biogenesis [BR:
dcr03009
]
108227584
04131 Membrane trafficking [BR:
dcr04131
]
108227584
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dcr04147
]
108227584
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
108227584
Ribosome biogenesis [BR:
dcr03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
108227584
Membrane trafficking [BR:
dcr04131
]
SNARE
SNARE associated proteins
Others
108227584
Autophagy
Aggrephagy
Other aggrephagy associated proteins
108227584
Exosome [BR:
dcr04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
108227584
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_16
AAA_2
AAA_33
AAA_5
AAA_22
AAA_14
TIP49
NPHP3_N
RNA_helicase
nSTAND3
Mg_chelatase
AAA_28
AAA_17
AAA_18
ATPase_2
Parvo_NS1
IstB_IS21
Viral_helicase1
AAA_lid_PRS2_C
ABC_tran
AAA_7
Vps4_C
NB-ARC
AAA_24
TsaE
NACHT
DUF815
Zeta_toxin
Zot
Motif
Other DBs
NCBI-GeneID:
108227584
NCBI-ProteinID:
XP_017258305
UniProt:
A0AAF1B4P9
LinkDB
All DBs
Position
6:complement(31941275..31946660)
Genome browser
AA seq
805 aa
AA seq
DB search
MSNQPESSDPKGTKRDFSTAILERKKAANRLVVDEAINDDNSVVALHPETMEKLQLFRGD
TILIKGKKRKDTICIALADDTCDEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVH
ILPVDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCV
VAPDTEIFCEGEPVRREDEDRLDEIGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA
LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLEKISKETHGYVGADLAALCT
ESALQCIREKMDVIDLEDDTIDAEILNSMAVTNEHFHTALGTSNPSALRETVVEVPNVSW
EDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISIKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSSGDAGGA
ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRYSI
FKSCLRKSPVSKDVDLKALAQYTQGFSGADITEICQRACKYAIRENIEKDIEKERKRNEN
SEAMEEDVDDEVSEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFAD
TSAAAAASDPFATSAGGADEDDLYS
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatcaacccgaatcatccgacccgaaaggcacaaagagggattttagtactgcc
attctggagcgaaagaaggcggccaatcgccttgttgttgatgaagcgattaatgatgac
aattctgttgtggctcttcatccggagactatggagaagctgcagctgtttcgcggcgat
acgatactgattaagggtaagaaaagaaaagatacaatctgcattgccctggctgatgac
acttgtgatgaaccaaagattaggatgaacaaggttgtcagatcaaacctgagggtcagg
cttggagatgtggtttctgttcatcaatgcgctgatgtcaagtatgggaagcgtgttcac
attctccctgtggatgacaccattgaaggtgttactggaaatctgtttgatgcttatctg
aaaccttatttcctagaggcatatcgacctgttagaaagggagacctttttcttgtcagg
ggaggtatgaggagtgtggaatttaaggttattgagactgaccctgctgagtattgtgtg
gttgcccctgatactgaaatcttttgtgagggtgagcctgtgagaagggaggatgaggat
aggttggacgaaatcggttatgatgatgttggtggtgtccgtaaacagatggcacagatt
agagagttggtggagctgccattgcgtcatccgcagctcttcaagtccataggagtgaag
cccccaaaaggaattttgctctatggaccacccgggtctggaaaaactttaatagctcgc
gcagttgctaatgaaacaggtgcattcttcttttgtattaatggacccgagattatgtcg
aagttggctggagagagtgaaagcaatcttagaaaagcattcgaggaagcggaaaaaaat
gctccttcgattatcttcattgatgaaattgactcaattgcccctaagcgtgagaagact
aatggggaagttgagaggagaattgtttcccagctgctgactcttatggatggacttaaa
tcccgtgcccatgtcattgttatgggtgctacaaatcgtcccaacagtattgaccctgct
ttgagaaggtttgggagatttgatagagaaattgatattggtgttcctgatgaagttggg
cgtctagaggttcttcgtattcataccaagaatatgaagcttgctgaagatgtcgatttg
gaaaaaatttcgaaggagactcatggttatgttggtgccgatctggcagctctatgtact
gagtctgcactccaatgtattagggaaaagatggatgtcattgacttggaagatgatacc
attgatgcagagattctcaattcaatggctgttactaatgaacacttccatactgctctc
ggaactagcaatccgtctgctctgcgtgaaactgttgttgaggttcccaatgttagttgg
gaggatattggtggcctggataatgttaagagagagcttcaagagactgttcagtatcct
gtggagcatcctgagaagtttgagaagtttggtatgtcgccttctaagggtgtgcttttc
tatgggccacctggatgtgggaaaaccttgctggccaaagctattgccaatgaatgtcaa
gcaaattttattagtatcaagggacctgaattgctcaccatgtggtttggagaaagtgag
gcaaatgtacgagaaatatttgacaaggctcgtggatctgccccttgtgtgctattcttt
gatgaactggattctattgctactcagaggggaagcagttctggagatgctggtggagct
gctgatagagttttaaatcaacttttgactgaaatggatggaatgtccgccaagaaaacg
gtttttatcattggagctactaacaggcctgatattattgatcctgcactattgcggcct
ggtcgtctagatcagttgatctacatccctcttcctgatgaagcttcccgatactcaata
tttaagtcatgcctcaggaaatctccagtttcgaaagatgttgacttgaaggctcttgca
cagtacactcagggcttcagtggtgctgatattactgaaatatgccagcgtgcgtgcaaa
tatgctatcagggaaaacattgagaaagatattgagaaggagaggaaaagaaatgaaaat
tctgaggctatggaagaggatgtcgatgatgaggtatcagagattaaggctgctcatttt
gaagagtcgatgaagtatgctcgcagaagtgtaagcgatgctgacattcgcaaatatcag
gcatttgctcaaacattgcagcagtccagaggatttggttctgaattccgatttgcagac
actagtgctgcagcagctgcatctgatccttttgcaacttctgctggcggagctgatgaa
gatgacttgtatagttag
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