Daucus carota (carrot): 108227631
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Entry
108227631 CDS
T05350
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108227631
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108227631
03012 Translation factors [BR:
dcr03012
]
108227631
Enzymes [BR:
dcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108227631
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
108227631
Translation factors [BR:
dcr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
108227631
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
T2SSE
BEX
Motif
Other DBs
NCBI-GeneID:
108227631
NCBI-ProteinID:
XP_017258366
UniProt:
A0AAF0XDE8
LinkDB
All DBs
Position
6:complement(33056842..33067282)
Genome browser
AA seq
1025 aa
AA seq
DB search
MSLRQLGINYYSLCKFLPLISSSHLRLNLSTSAMSSRPNFQGGRRGGARRGGPGRGGGGG
RGGGGRGEQRWWDPVWRAERLAQQAAEMEVLDENEWWGKMEGLKRGGEQELVIKRNFSRG
DQQVLDDMAYQLGLYFHAYSKGKALVVSKVPLPNYRADLDERHGSAQKEIRMSSETEKRV
ENLLGGSGGTVSVSNDPGASSQGVQKPHISDVAKPALKVKNDTRKERLHSELKQRQENLK
ARDTVKKMLAFREKLPANKIKYEFLKAVAANQVLVVSGETGCGKTTQLPQFILEEEISSL
RGADCNIICTQPRRISAISVAARISSERGENLGETVGYQIRLESKRSSQTRLLFCTTGVL
LRQLIDDPNLTGVSHLLVDEIHERGMNEDFLIIILRDLLPRRPDLRLILMSATINADLFS
KYFGDAPTIHIPGLTFPVSELFLEDVLEKTHYCIQASPENNQYHGNSRRKKQQESKTDPI
TELFEEANIDSLYKSYSATTRQSLEAWSGSQLDLGLVESTIEYICRHEGDGAILVFLTGW
DDISKLLDKVKANNFLRDPSKFLVIPLHGSMPTVNQREIFDRPPLNTRKIVLATNIAESS
ITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASARQRRGRAGRVQPGVCYRLYPK
MIHDAMPQYQLPEILRTPLQELCLHIKSLKLGAIGLFLGKALQPPDSLSVQNAIELLKTI
GALDDTEELTPLGRHLCTLPLEPNIGKMLLMGSIFKCLNPALIIASALAHRDPFVLPINR
KEEADDAKRSFAGDSYSDHIALLKAFEGWKDAKRLGNERAFCWENFLSPITLQMMEDMKN
QFVDLLSDIGFVDKSKGVNAYNQYSNDLEMVSAVLCAGLYPNVVQCKRRGKRTALYTKEV
GKVDIHPASVNAGVHLFPLPFMVYGEKVKTSSIYIRDSTNISDYALLMFGGHLIPSKSGK
GIEMLDGYLHFSASKNVLELIQKLRGELDKLLKKKIEDPSINISEEGKGVVDAVVELLHS
RNVQY
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atgtctttgcgccaactaggcatcaactactactcactctgcaaatttctccccctaatt
agtagctctcatctccgtctcaatctctcaacatctgcgatgtctagccgccccaatttc
caaggcggacgtcgcggtggggcccgccgcggcggtcctggccgcggaggcggtggtggt
cgcggaggcggagggcgcggtgagcagcgctggtgggaccctgtgtggcgagctgagcga
ttggctcaacaagcagctgagatggaggtgcttgatgagaatgagtggtgggggaaaatg
gagggactgaagagaggaggcgaacaagagcttgtgattaagcggaattttagtcgagga
gatcaacaagttttagacgatatggcttatcagttggggctttacttccatgcttatagc
aaagggaaggcactcgttgtgagcaaggttccattgccaaattaccgtgcagatctcgat
gaacgccatggatctgcacagaaagagatacggatgtccagcgaaactgagaagagagtt
gaaaatttattgggtggttcaggaggaactgtttctgttagtaatgatcctggagcttcc
tcacagggggtgcagaagccacatatttcagatgtggctaaacctgccttaaaagtaaaa
aatgatactagaaaagagagactgcatagtgaactgaaacaaagacaggagaacctgaag
gcacgcgacaccgttaagaagatgctggctttcagagagaagcttccggcaaataaaatt
aaatatgagtttttaaaagctgttgcagcaaatcaggtattggtggtttctggagagacc
ggttgtgggaaaactacacagcttcctcagtttatcctggaagaggaaatatcatctcta
cgaggtgctgattgcaacataatttgcactcaaccccgtcgtatatctgccatatctgtt
gcagcgcgaatatcttctgaaagaggagaaaaccttggtgaaactgttggctaccaaatt
cgtctggagtcaaaacgctcgtctcaaacaagattgctattttgcactacaggagtttta
cttcggcagctgattgatgacccaaatttaacaggagttagccatttgctagtggatgaa
attcatgaaagaggaatgaatgaggactttcttataataattttgcgtgatctccttcct
cgccgccctgatctaagacttattttgatgagtgccactattaacgctgacttgttttcc
aaatactttggagacgcaccaactatccacatcccggggttaacttttcctgtatcagag
ttatttttggaagatgtactggagaaaactcattattgcatccaagcaagccctgaaaac
aatcagtatcatggaaattcaaggaggaagaagcaacaggagtctaaaactgatcctata
acagagttatttgaggaagcaaatattgattctttgtacaaaagctatagtgcgactaca
aggcaatctcttgaagcttggtcgggttcgcagcttgatctgggtcttgtggaatcaaca
attgagtatatttgtcgccatgaaggggatggagcaatacttgtatttctgactggttgg
gatgacatttctaagcttcttgacaaagtcaaagctaacaattttttaagagatcccagc
aaattcttggttattccacttcatggttctatgcctaccgtaaatcagcgtgaaatattt
gatcgtccacctttgaacacgagaaaaattgtgctagctacaaacatcgctgaaagtagt
atcactatagacgatgttgtatatgtcatagactgtggaaaagccaaggagactagttat
gatgctctcaacaaacttgcttgccttttaccatcatggatctcaaaagcttcagcacgt
cagagacgtggtcgagctggccgtgtacaacctggagtctgttatagattatatccaaaa
atgatccatgatgctatgccccagtatcaactacctgaaattctgcgtacgcctttgcaa
gaattatgtttacatattaagagcttaaaacttggagctattggattgtttttggggaag
gcacttcagcctccagattctctctctgttcaaaatgctattgaactcctaaagacaatt
ggcgcgttggatgacacagaagagcttactccacttgggaggcatttatgtactctgcct
ttggagcctaatattggaaagatgctcctcatgggttccatatttaaatgcctaaatcct
gcattaatcattgcatccgcactcgcacatcgcgacccatttgttcttccaataaatagg
aaagaagaggcggatgatgcaaaaagatcatttgctggtgattcttatagcgaccatata
gcattactgaaagcatttgaaggatggaaggatgcaaaacgactcggaaatgagagagcc
ttttgttgggaaaacttcctgtccccaataactttgcaaatgatggaggatatgaagaat
caatttgtagatctactgtcagacattggcttcgtagataaatcaaagggtgtaaatgca
tataaccagtatagcaatgatttggagatggtaagtgcagttctttgtgctgggctttat
ccaaatgttgtgcagtgcaaacggagaggcaagagaacagccctgtacacaaaagaagtt
ggaaaagtcgacattcatccggcatctgtaaatgctggagtacatttattccctcttcct
ttcatggtttatggtgagaaggtgaaaacgtcaagcatttacataagagactcgacaaac
atatcagattacgccctacttatgtttggtggacatctcattcctagcaagtcaggtaaa
ggaattgaaatgcttgatggatacctccatttttctgcatcaaagaacgtgctagagttg
atccagaaactgcgaggagaacttgacaaacttcttaaaaagaagattgaagaccctagc
ataaatatttccgaagagggcaaaggtgtggttgatgctgtagttgagttgttgcacagt
cggaatgtacaatattag
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