Daucus carota (carrot): 108227679
Help
Entry
108227679 CDS
T05350
Name
(RefSeq) exopolygalacturonase
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr00040
Pentose and glucuronate interconversions
dcr01100
Metabolic pathways
Module
dcr_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108227679
Enzymes [BR:
dcr01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
108227679
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
End_N_terminal
NosD
Motif
Other DBs
NCBI-GeneID:
108227679
NCBI-ProteinID:
XP_017258449
LinkDB
All DBs
Position
6:complement(29775806..29777567)
Genome browser
AA seq
400 aa
AA seq
DB search
MEMITSKPIPGILCVLIWMSIITRSQGAVIDAKQNGAKGDGVTDDSQAITSAWQSACSSP
TPSKLLIPAGQYAVGPMTFLGPCKAPITVQFDGNLKAPTDLNKLKSQDGWIVFQQVDAMT
LSGGVFDGQGKVAWSQNNCAQTGKCSNLPINIRFNKVTNSMVQGISSVDSKLFHMNILQC
QNLTLSHITINAPGDSLNTDGIHIGRSSGITISDSDIKTGDDCVSMGDGSQQVTIERVTC
GPGHGISVGSLGKYHDEQPVMGVFVRDCTFTNTMNGVRVKTWPASPNGVCQDLHFENLKM
DNVGTPILIDQQYCPYGQCQAQAPSKVKISEVSFKGIHGTSSTKVAIKIACSKGIPCQNV
ELNDINLQYHGPDGNGVSQCVNVLPTMNGQIFPPACTETP
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atggagatgattacttcaaaaccgattccaggtatattatgtgtcctaatctggatgtcg
ataattacgagaagccaaggtgcagtcattgatgcaaaacagaacggagcaaaaggtgat
ggtgttacagatgatagccaggctattacaagtgcttggcaatcagcatgttcgtcgcca
actccgagcaagcttttgattccagcagggcaatacgctgtcgggccaatgacattcctt
ggtccctgtaaagctcctattacagtgcagtttgatggaaacttgaaggctcccacggat
ctcaacaagctcaaatcacaggacggatggattgttttccagcaagttgatgccatgacg
cttagtggtggcgtctttgatggtcagggcaaagttgcctggtctcagaataattgtgcc
caaactggaaaatgcagcaatttacccataaatataaggttcaacaaggtgacaaattca
atggtgcaagggatatcttcagtggacagcaaattgtttcacatgaacatactacaatgc
cagaacttgactctcagccatataaccataaatgcgccaggagacagcctcaacactgat
ggcattcatattggtcgctcaagtgggataacgatctctgattctgacatcaaaaccgga
gatgattgtgtctccatgggtgatggaagtcagcaagtgactatagaaagggtgacgtgc
ggaccaggccatggaattagtgtaggaagcttaggaaagtatcacgacgaacaacctgtg
atgggagtttttgtcagagattgtacattcaccaacacaatgaacggtgttcgtgtcaaa
acatggcctgcttctcccaatggcgtttgccaggacttgcatttcgagaatctgaaaatg
gataatgtaggcacccctatactgatagatcaacagtattgtccttatggccaatgccaa
gcacaggctccttcgaaagttaagataagcgaggtgagtttcaaaggaattcacggaaca
tcatcgacgaaagttgccataaagatagcttgcagcaaagggataccctgtcagaatgtg
gagttaaatgacataaatttgcagtaccatggtccagatggaaatggtgtgtctcaatgt
gtaaatgttttgccaacaatgaatggacaaatattccctccagcttgtacagaaacacca
tga
DBGET
integrated database retrieval system