Daucus carota (carrot): 108227690
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Entry
108227690 CDS
T05350
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108227690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108227690
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108227690
mRNA degradation factors
5'-3' decay
Decapping complex
108227690
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
108227690
NCBI-ProteinID:
XP_017258459
UniProt:
A0A161ZSN6
LinkDB
All DBs
Position
6
Genome browser
AA seq
814 aa
AA seq
DB search
MERSDAKQLDQFSASSTSDAALFDASQYAFFGQDGAEDVELGGLEDEVNDVPALGFGDDE
YHLFDKEEGSVIGSLSDVDDLATTFSKLNRVVTGPRHPGVIGDRGSGSFSRESSSAAEWS
QDIDFPDWLDQHISDTESCQESKRWSSQPHLASVLLSESKPIYRTSSYPLQQHQQQFPSD
TNLEPKSAFTSYPPPGSIPQLSSPRQHSRHLNVSSLGSGSQIPFSAPNLSPMSNSNIHMS
SMPHGYRYSGNMSHLVSPGISLGSGSQNNWHNHAGLLHGDHSILLNNILQQQLSHQNNLV
SPHLISQQQQLQQHRLNLPIQPSLAHFSSLQSQFYNTLPSPTSHLRKHRSAEMRDQRPKV
SQRGKHARLSQQNSDASQQSDYNWPQFRSKHMTADEIESILRMQHAATHSSDPYIDDYYH
QARLAKKSTESRSKIRFCPAHLKEPSSRSRNNSESQPHLQVDSHGRVSFSSIRTPQPLLE
VDLPFSASGEGSADQKMSERPLEQEPMLAARITIEDGLRVLLDVEDIDRFLQYSQPQDGG
SQLRRRRQILLDGLAASLQLADPLGKSGKSVGLNPKDDIVFLRLVSLPKGRKLISKYLQL
LFPGGELARIVCMTIFRHLRFLFGGLPSDPEAAKTITSLAKTVTECVTGMDLNSLSACIA
AVVCSSEQPPLRPLGSSAGDGASIILKCVLERATLLLTNPQASSNRILPNPVLWQASFDA
FFGLLTKYCLGKYDSIMQSIYAQNTQPSSDVINTEAARAINKEMPVELLRASLPHTNDNQ
RKLLLDFAQRSMPVSGINAHGGDGGHVTPEFVRG
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atggagagatctgatgctaaacaattagaccagttttcagcaagctctacctctgatgct
gcactttttgatgcatcacaatatgcattttttggacaagatggagcggaagatgttgag
ttgggaggtctggaagacgaggtgaatgatgtacctgcacttggttttggcgatgatgaa
tatcatttgtttgacaaggaagagggatcagttataggatctctatctgatgtggatgat
ctggcaaccacattctcaaagttaaacagagttgttaccggacctagacatcctggagtt
attggtgatcgagggtctggctccttttcaagggaaagttcttctgccgctgaatggtca
caagacatagattttcctgactggttagatcagcatatatctgacacagaaagctgccag
gaaagtaaacgatggtcttcccaaccacatcttgcgtccgtcttactttctgagtcaaaa
cctatttacaggacatcttcatacccgctacaacaacaccagcaacaatttcctagtgat
actaatttagaaccaaagtcagcttttacttcctaccctcctccaggtagcatacctcaa
ctgtcttcacctcgccaacattcacgacatctaaatgtatcatctctgggtagtgggtct
cagattcccttctctgcaccaaacctttctcctatgtccaactctaatattcatatgtct
agcatgcctcatgggtaccgttatagtggaaatatgtctcatttagtctctcctggtatt
tctcttggtagtgggtcacaaaacaattggcacaaccatgcagggttacttcatggggat
cattccattctcttaaataacattttgcaacagcaattgtctcatcagaataatttggtt
tccccacatttgatctctcagcagcagcagttgcaacagcacaggctcaatcttccaatt
caaccatctttggctcatttttcatcactgcaatcccagttttataatacccttccttct
ccaacatcacacctgagaaaacatagatcagctgagatgcgagatcaacggcctaaagta
tcacaaagaggtaaacatgctcgtttatctcaacaaaattctgatgctagccagcagagt
gattataactggccgcaatttagatctaaacatatgacagctgatgaaatagaaagtatt
cttagaatgcagcatgctgcaacacatagcagtgacccctacatagatgattattaccac
caagctcgtctagccaaaaaatctactgaatcaaggtcaaagattcgcttctgcccagct
cacctgaaggagccctcttctcgatcacgtaacaattcagaatcccagccgcatcttcag
gttgattctcatggacgggtttcgttttcttctatccgtacacctcagcctctccttgaa
gttgatcttcctttctctgcttctggtgagggtagtgctgatcagaaaatgtctgagaga
cctttagaacaggagcccatgctggcagctagaataacaattgaggacggccttcgtgtc
cttcttgatgttgaggacatcgacaggttcctacagtatagtcaaccccaagatggtggg
tctcagctgagacggaggcgacaaatattgttagatggtttggcagcttcacttcaactt
gctgaccctctagggaaaagtggaaaatcagtcgggctaaatcccaaggatgacattgta
tttttacggctggtatctcttcctaaaggtcgaaagcttatttcaaaataccttcagctt
ctttttcctggtggtgagttggctcgaatagtttgcatgactatcttccgtcacttgagg
tttttatttggtggccttccctctgatcccgaagccgccaaaactatcaccagtcttgca
aagacggttactgaatgcgttactggcatggacctgaattctctgagtgcatgtattgct
gcagtagtttgttcttcagagcaacctccccttcgtccactcggtagttctgctggagat
ggagcatctattatcttaaaatgtgtcttggagagggcaacactgctcttaacaaatcct
caggcctctagcaaccgtattctgcctaatcctgttctgtggcaggcttcatttgatgcc
ttttttggtcttcttaccaagtattgcctgggtaaatatgacagcattatgcaatctata
tatgcacaaaacacccaacctagctcagatgttattaatacagaggcagccagagctata
aacaaagaaatgcctgtagaacttctacgtgctagtcttcctcacacaaatgataatcag
aggaagctgctacttgattttgctcagcggtctatgccagtaagtggaattaatgctcat
ggtggagatggtggccatgttactccggaatttgtccgtggttag
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