KEGG   Daucus carota (carrot): 108227772
Entry
108227772         CDS       T05350                                 
Name
(RefSeq) UBP1-associated protein 2A
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
dcr  Daucus carota (carrot)
Pathway
dcr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dcr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108227772
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dcr03019]
    108227772
   03041 Spliceosome [BR:dcr03041]
    108227772
Messenger RNA biogenesis [BR:dcr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     108227772
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     108227772
Spliceosome [BR:dcr03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    108227772
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_Nup35 FANCI_S1-cap
Other DBs
NCBI-GeneID: 108227772
NCBI-ProteinID: XP_017258590
UniProt: A0A161ZXW2
LinkDB
Position
6:complement(33689442..33694329)
AA seq 438 aa
MAKKRKSISTPSSSKPQLDEPQQQNSKKIPKIEEQREKEKEKQEEPAVIEEEEEEESEEE
VEEEEEEEEEDEAVKTEKLNELLQPFSKDQIIEFLKIAALKDKKLLDRITEFAESDPAHR
KVFVHGLGWDATSDQVFSTFSQFGEIEDCKVPTDKATGRVKGFAFILYKTRESALKALKE
KQKKIGNRMTSCQLASAGPPGTNGVQDPSGRKIFVANVGAHVSPDALKLFFGKFGELEEG
PLGMDPVTGKFKGFSIFVYKNADGCKKALEEPVKMFDNCRLECRLAVDGLKNNKNQNQAR
VLSNVAAGFGGIPQTDINSAMNYNVGVNPGFYVNPAVGLMGQNPGFGLANPMMALNQSGL
ATSLGVNPQTVRFSGNYGINSVSPSVIASYAAQSSLQGLGAYQSQLGSSAGSTAAVAARP
QSSGLGSTGQAFPSFFGR
NT seq 1317 nt   +upstreamnt  +downstreamnt
atggcgaagaagagaaagtcaatctctacaccatcttcttcaaagccccaattagatgaa
ccccaacaacaaaactctaagaaaatccccaaaattgaagaacaaagagagaaagagaag
gaaaaacaagaagagccagccgtcatagaagaagaggaggaggaagaatcggaagaagaa
gttgaagaggaggaggaggaggaggaagaagatgaagcggtgaaaacggagaaattgaat
gaattgcttcagccgtttagtaaggaccagattattgagtttttgaaaatcgctgcgctg
aaggataagaaattgctagataggattactgagtttgctgaatctgacccggctcatcgg
aaggtgtttgttcatggtcttggttgggatgcgacttctgatcaggtgttctcgacgttt
agtcagtttggggaaattgaggattgtaaggttcctactgataaggcgactgggagagtc
aagggttttgcttttattctttataagactcgtgagtcggcgttgaaggcgcttaaggag
aagcagaagaagattgggaatcggatgacttcatgccagctggcgtctgctggaccgcct
gggacgaatggggttcaggacccgagtgggaggaagattttcgtggctaatgtgggtgct
catgtgagtccggatgcgcttaagttgttttttgggaagtttggggagttggaggaaggg
cctttaggcatggatccggttacagggaagtttaaggggtttagtatttttgtttataaa
aatgctgatgggtgtaagaaggctttggaggagccggttaagatgtttgataattgcagg
ttagagtgtcggcttgcggtggatggtttgaagaataataagaatcaaaaccaggcgagg
gtgttgagtaatgtggctgctggttttggtggaattccacagactgatattaatagtgct
atgaattataatgtgggtgttaatccgggattctatgtgaatcctgctgttgggttgatg
ggacaaaatccagggtttgggttggctaatccgatgatggctttaaatcagagtggtctc
gctacgtctcttggagtgaatcctcaaactgtcaggtttagtgggaattatgggattaac
agcgttagtccgagtgtgatagctagttatgctgctcaaagttctttacagggtttaggt
gcttatcaaagtcagctgggatcttctgccgggtcaacggcagcagttgctgcaaggcct
cagtcttctggtttggggtccacaggacaagcttttccgtcattctttggccgctag

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