Daucus carota (carrot): 108227782
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Entry
108227782 CDS
T05350
Name
(RefSeq) long chain base biosynthesis protein 2b
KO
K00654
serine palmitoyltransferase [EC:
2.3.1.50
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr00600
Sphingolipid metabolism
dcr01100
Metabolic pathways
dcr04382
Cornified envelope formation
Module
dcr_M00094
Ceramide biosynthesis
dcr_M00099
Sphingosine biosynthesis
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09100 Metabolism
09103 Lipid metabolism
00600 Sphingolipid metabolism
108227782
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
108227782
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
dcr01007
]
108227782
Enzymes [BR:
dcr01000
]
2. Transferases
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.50 serine C-palmitoyltransferase
108227782
Amino acid related enzymes [BR:
dcr01007
]
Aminotransferase (transaminase)
Class II
108227782
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Aminotran_1_2
Beta_elim_lyase
DegT_DnrJ_EryC1
Aminotran_5
Cys_Met_Meta_PP
OKR_DC_1
Motif
Other DBs
NCBI-GeneID:
108227782
NCBI-ProteinID:
XP_017258612
UniProt:
A0AAF0XCV5
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All DBs
Position
6:27312187..27316787
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AA seq
489 aa
AA seq
DB search
MITIPYITALTTYFSYGLLFAFGQFRDFFRKIFDWWRGNNLQGYAPIVLGLEDFYTRRLY
LRIQDCFGRPISSPPDAWVNVVERVSKDNNKTLKRTTNVSRCLNLGSYNYLGFAAADEYC
TPRVIDSMKKFSPSTCSTRTDGGTTTLHTELEECVADFVGKPAALVTGMGYATNSAILPS
LIGKGGLIISDSLNHNSIVNGARGSGATVRVFQHNTPSHLESVLRENIAEGQPRTHRPWK
KIMVIVEGIYSMEGELCKLPEIVAICKKYKAYVYLDEAHSIGAIGKTGRGVCELLGVDTA
DVDIMMGTFTKSFGSCGGYIAGSKEVIQYLKHTCPAHLYATSISPPAAQQIISAIKVILG
QDGSNRGAQKLARIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLK
QNLAVVTVAFPATPLLLARARICLSAAHTREDMIKALKVISSVGDMIGIKYFPAEPKKPQ
LEDGPVKLD
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgattacgataccgtatataaccgctttaactacatatttcagctatggattgctcttt
gctttcggtcagtttcgtgatttctttcgtaagatcttcgattggtggcgcggtaacaat
ctccagggttatgctccaatcgtcttaggccttgaggacttttatactcgccggttgtat
cttcgtatccaggactgttttggtcggccaatatcgagtcctcccgatgcttgggttaat
gtggtggagcgtgtctccaaggacaataacaagacactaaagcgaacaactaatgttagc
agatgtctcaacttgggatcatacaattaccttggctttgctgcggcagatgaatactgc
acgccccgggttattgattctatgaagaagttttctcccagtacctgcagtactcgtact
gatggaggcacgacaacattgcatactgaactggaggaatgtgttgctgattttgttggc
aagccagctgctttagtgactggaatgggctatgcaacaaactctgctatccttccttcc
ttgattggaaagggaggtttgataattagtgattctctaaaccacaactctatagtaaac
ggtgctagggggtccggagctacagttagagtttttcaacacaacactccatcccactta
gaaagtgttttgagagaaaatattgccgaaggacaacctagaacacatagaccatggaaa
aaaattatggttattgttgagggtatatacagcatggaaggagaactgtgcaaacttcct
gagattgttgcaatttgcaagaaatacaaggcatatgtatatttagacgaggctcacagc
attggagcaatcggtaaaacaggaaggggtgtttgtgagcttttaggtgttgacactgct
gatgtggatatcatgatgggaacttttaccaagtcatttggatcatgtggtggctatatt
gctggatcgaaagaagttattcagtatttaaagcacacttgcccggcacatctatatgcc
acatcgatatcacctccagctgctcagcagataatttctgcaataaaggttatacttggg
caggatggttctaatagaggggctcaaaaacttgcaagaatacgtgaaaacagcaatttt
ttcaggtcggagcttcagaagatgggatttgaggtcctaggagacaatgactctcctgtt
atgccaataatgctatataatccagcaaaaattcctgctttttcgcgggagtgccttaaa
caaaatttggctgtagtgactgttgcttttccagctacccctctgttgttagccagggca
cgcatatgcctttctgctgctcacacaagggaagatatgattaaagcattaaaggtcatc
agtagtgttggtgacatgattggtataaaatactttcctgctgaaccaaagaaaccgcag
ttggaagatggccctgtgaaattggactaa
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