Daucus carota (carrot): 108227814
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Entry
108227814 CDS
T05350
Name
(RefSeq) serine/arginine-rich splicing factor SR45a
KO
K12897
transformer-2 protein
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108227814
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
dcr01009
]
108227814
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dcr03041
]
108227814
Protein phosphatases and associated proteins [BR:
dcr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108227814
Spliceosome [BR:
dcr03041
]
Common components
Common spliceosomal components
SR proteins
108227814
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_DEAH11
CoV_nucleocap
Motif
Other DBs
NCBI-GeneID:
108227814
NCBI-ProteinID:
XP_017258654
LinkDB
All DBs
Position
6:complement(4246743..4250703)
Genome browser
AA seq
250 aa
AA seq
DB search
MAESPRKRYSRSPSPYEEQLRLPNSRSRSRSRSWSRPRGRSRSRSLSRGRGRPTEVVNPG
NTLYVTGLSTRVTERDLEDHFNKEGKVASCFLVVEPRSRISRGFAFITMDSVEDADRCIK
HLNQSVLEGRYITVERSRRKRPRTPTPGHYLGLARDSSSRGERGDRGGGRYRGSSGRDEY
RRSPRRSPYRHGRDYSPPPRRSPYGGRSRRERTRSPPYSPYSGRSRKERTRSPPPYSPYS
PDRTYAHRGR
NT seq
753 nt
NT seq
+upstream
nt +downstream
nt
atggctgagtctccccgcaaaaggtattcgaggtctccttctccttatgaagaacagctt
aggttgccaaactcgcgctctaggtccaggtctaggtcctggtccaggcctaggggaagg
tctaggtccagatcactatcgagaggccgtggaaggccaactgaggttgttaatcctgga
aacacactttatgtcactggcctgtctacaagagttacagagagagatcttgaagatcat
ttcaacaaggaaggaaaagttgcttcttgctttctcgttgtggagcctcgttctcgcatc
tctcgtggatttgctttcattacaatggacagcgttgaggatgctgatcgttgcattaaa
cacctgaatcaatcagttctggaggggcgatacataactgtggagaggtctcggaggaag
cgccccagaacgcctacacctggtcattatcttggccttgctagggacagtagctctcgg
ggagaacgtggtgatcgaggaggtggtagatatcgtggtagttcaggccgtgatgagtac
aggaggtctccaaggcgctcaccttatcgacatggccgggattactctcctcccccaagg
cgatctccttatggtggaaggtcaagaagggaaaggactcgatcccctccatattctcca
tatagcggaaggtcgagaaaggaacggactagatcaccacctccctattctccttacagt
cctgacaggacttatgctcatcgaggcaggtga
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