Daucus carota (carrot): 108227854
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Entry
108227854 CDS
T05350
Name
(RefSeq) serine/threonine protein phosphatase 2A regulatory subunit B''beta
KO
K11583
serine/threonine-protein phosphatase 2A regulatory subunit B''
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108227854
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
dcr01009
]
108227854
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108227854
03036 Chromosome and associated proteins [BR:
dcr03036
]
108227854
Protein phosphatases and associated proteins [BR:
dcr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
108227854
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
108227854
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
108227854
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EF-hand_13
EF-hand_7
EF-hand_6
EF-hand_1
EF-hand_8
EF-hand_5
P2R3B_EF-hand
DUF4187
ARMT1-like_dom
Motif
Other DBs
NCBI-GeneID:
108227854
NCBI-ProteinID:
XP_017258708
UniProt:
A0AAF0XC09
LinkDB
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Position
6:complement(4709126..4723407)
Genome browser
AA seq
539 aa
AA seq
DB search
MDVDFNGDVGSLDAELLQLAEVSSLAIKSNPFVAEKLFEQWLSLPDTVSMVKSLLNNAKA
GVPLNVSGTCSSPNAASSNSIPSMFSAGSTPPLSPRSSSGSPRIVKQRAGPSVLGSPLKV
LSEPVKEVIPQFYFQDGRPPPNELKERCLFRINQFFYGHMDGLQINEFKPVTKEICKLPS
FFSPALFKKIDANSTGIVTRDAFVDYWVNSNMLTKDTATQIYIVLRQPDLNYITQDDFKP
VLRELLSTHPGLEFLQSTPEFQERYAETVIYRIFYYMNRCGNGRLTLRELKRGNLIAAMQ
HADEEEDINKVLRYFSYEHFYVIYCKFWELDTDHDFLIDKENLIRYGNHALTYRIVDRIF
SQVPRKFTSKVEGKMGYEDFVYFILSEEDKSSDPSLEYWFKCIDLDGNGVLTRNELQFFY
EEQLHRMECMAQEPVLFEDILCQIVDMVKPENESYFTLRDLKGGKLSGSVFNILFNLNKF
MAFETRDPFLIRQERENPTLTEWDRFAHREYIRLSMEEDAEDASNGSADVWDESLEAPF
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atggatgtggatttcaacggcgatgttggttccctggatgcggagctgttgcagttagcg
gaggtttcttctttggccatcaaatcgaatcctttcgtcgctgagaagcttttcgaacaa
tggctctcgcttcccgacactgtttctatggtaaaatccttgcttaacaatgccaaggcc
ggtgttcccttaaatgtttctggaacatgttctagcccaaatgctgcttcatcaaactcc
ataccttccatgttttccgctggaagcacgcctccgctttcacccagaagttcatctggg
tccccacgtattgtgaaacagagagctggtccttctgtattaggttcgccgctaaaagtt
ctgagtgaaccagtaaaggaggtgatacctcagttctattttcaagatggccggccacct
ccaaatgaacttaaagaacgatgtttatttagaattaaccaattcttttatggccatatg
gatggattgcagataaatgaatttaaaccagtcaccaaagaaatatgcaagttgccttca
ttcttctcccctgcacttttcaaaaagattgatgctaattcaacaggcattgtaaccaga
gatgcatttgttgattattgggtaaatagcaacatgttgacgaaggacacagcaacccaa
atatatatagttctaagacagccagatctgaattacatcactcaggatgacttcaaacct
gtgcttcgagagcttttatcaactcatcctggcttggagttcttacagagcacacctgaa
tttcaggaaagatatgctgaaactgttatatacagaatattttactatatgaatcgatgc
ggcaatggtcgtcttaccctcagggagctgaaacgggggaacctgattgctgctatgcaa
catgcagatgaagaagaggatattaacaaagttttgaggtacttctcttatgaacacttt
tatgtgatctattgcaagttctgggagcttgatacagatcacgacttcttgattgataag
gagaaccttattagatatggtaaccatgcactgacatacaggatcgttgacagaatcttt
tctcaggtgccacgaaagtttactagtaaggttgaagggaaaatggggtatgaggatttt
gtttatttcatactgtcggaggaggataaatcatctgatcctagtctcgagtactggttt
aagtgcatagacttggatggaaatggtgttctgacaaggaacgagttgcaatttttttat
gaagagcagttgcatcgaatggaatgcatggcccaagaacctgtgctctttgaggatatt
ttatgtcagatagttgatatggttaagccagagaatgagagctattttacgttacgtgat
ttgaaaggtggaaaactctcaggcagtgttttcaatatcctcttcaatcttaacaagttc
atggcctttgaaactcgtgatccatttttaattcggcaggagcgggagaatccaacattg
acagagtgggatcggtttgcacaccgagaatatatcaggctttcaatggaagaagatgct
gaagatgcctctaacggaagtgcagatgtttgggatgaatcacttgaggcccccttctga
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