Daucus carota (carrot): 108227880
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Entry
108227880 CDS
T05350
Name
(RefSeq) autophagy-related protein 13a isoform X1
KO
K08331
autophagy-related protein 13
Organism
dcr
Daucus carota (carrot)
Pathway
dcr04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
108227880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dcr04131
]
108227880
03029 Mitochondrial biogenesis [BR:
dcr03029
]
108227880
Membrane trafficking [BR:
dcr04131
]
Autophagy
Autophagosome formation proteins
ULK complex
108227880
Atg1 complex
108227880
Mitochondrial biogenesis [BR:
dcr03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
108227880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG13
TGT_C1
Motif
Other DBs
NCBI-GeneID:
108227880
NCBI-ProteinID:
XP_017258741
UniProt:
A0A164WTV9
LinkDB
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Position
6:complement(35974356..35979103)
Genome browser
AA seq
613 aa
AA seq
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MDGQISNSHGEHGRFEQILSQFLLKSLHIVLDSRVPTIHPYNRKNDLSLGAQAKKSDKWF
SLVLGDRPAALDNLSFWHRNLMDPMIIDIILVQDVPNYLSQPSPKAQEETVIERWIVQFE
YVRTTTPQGGDSSAAYKKTYKKLIILLRSLFSMMRLLPAHRAFRKLCSSSKSCDYDINYK
VSSFSAPFSRSEEELMKQYNFSPVEAQQGCFSISVTYRESLSDFNLETSALFPPQIISDY
VGSPATDPLRAFPSTGKGVCATSFPSRGFQSTSTHSERPHSWTSGIHRGASLPHKQPLSG
SPPIYQSSGRSDLSSSPTDVYGHRIPNYRLPNHYKNNNFDAYQLSPPFSPSTSPSPPTHL
TGGNFMQSRLRSETSPVSIPHPMLGRSPRYLSPNLSDTSRHSLPPLSPRNAKHDSSSQES
PSGMRSLRKLDLSKAGELNSGMPISYTGQKLSGDTKDDSGRFSGLLSSSGSPRIGFSRSS
SRISFPDDLDDCDFSCPFIVDDVDTSDLQSSQNLGVSKTLEVSSQVISTARKSHDAAVGA
LVHMFRTAPPLRQDSSCYSSRSMKQEIGQGAGSSSAFFLPRKTSDALEELRAYKDMKELL
LSKSARMAAKEEA
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggatgggcagattagtaattctcatggtgagcatggacgcttcgaacaaatcctttct
cagtttcttctgaaaagcttgcacattgtattggactcacgagttcctacaattcatcct
tataatcgcaaaaatgatctgtcactgggagctcaggcgaaaaagagtgacaaatggttc
agcttagtgttaggggatcgtccagctgctttagataatctgagtttctggcatagaaat
ttgatggatcctatgataattgacattatacttgtccaagacgtgcctaattatctgtca
cagccttcaccaaaggcacaagaggagacagttatagagaggtggattgttcagtttgag
tatgttaggactacaactcctcaaggtggagactcttctgcagcttataagaaaacatat
aagaaactaatcatccttctacgttctcttttttcaatgatgaggcttcttccggcacac
cgagccttccgtaagttatgttcatctagcaagagttgtgattatgatataaattacaag
gtctcttcctttagtgctccgttttcaaggtcggaggaagaactaatgaagcaatataat
tttagtccagttgaagcacaacaaggttgcttttcaatatcggtaacatatcgtgaaagc
ctttccgactttaacttggagacttctgcattgttcccaccacagattatttcggattat
gttgggagccccgcgacagacccgttaagggctttcccttccacaggaaagggtgtctgt
gcaacatccttcccatctagaggttttcaatcaacatcaacacattctgaacgcccacac
agctggacaagtggcattcacagaggagcttctttaccgcataagcaaccccttagtgga
tccccaccaatatatcaatctagtggtcgaagtgatttatcttcgtccccgactgatgta
tatggtcatagaattccaaactatagattgccgaatcactacaaaaataataattttgat
gcttaccagctctcacccccattctcaccatctacttctccatctcctccaacacatctt
actggtggaaatttcatgcaaagtcgactacgatcagagacttctcctgtaagtattcca
catccaatgctgggaaggagcccaaggtatctctctcccaatctgtctgacacgagtagg
cattcacttcctccgctatcccctagaaatgcaaagcatgattcttcctcacaagagtct
ccatctggaatgaggtcgttgagaaaattagacttatcaaaggcaggggagttgaattct
ggaatgccaatttcatatactggtcaaaagttgtcaggagataccaaagacgactccggg
aggttctcaggtttgctctcttctagtggttccccgagaattggattctcgagaagctct
agtagaatttctttcccggatgatttggatgattgtgacttctcgtgtcctttcattgtg
gatgatgttgatacttctgatctgcaatccagtcaaaatcttggtgtatcaaaaacttta
gaagttagttctcaagtaatctcaacagctaggaagtcacatgatgctgctgtcggtgca
cttgttcacatgtttagaacagcacctccactgcgacaagattctagttgctactcatcc
aggtcaatgaaacaagaaattgggcaaggggctggatcttcatctgcgttcttcctgcct
agaaaaacatcagatgcactggaagagctcagggcttacaaagatatgaaagaacttctt
ctttctaagagcgctagaatggctgcgaaggaggaagcttag
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