Daucus carota (carrot): 108227919
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Entry
108227919 CDS
T05350
Name
(RefSeq) AMSH-like ubiquitin thioesterase 1 isoform X1
KO
K11866
STAM-binding protein [EC:
3.4.19.12
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
108227919
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
dcr01002
]
108227919
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dcr04131
]
108227919
04121 Ubiquitin system [BR:
dcr04121
]
108227919
Enzymes [BR:
dcr01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
108227919
Peptidases and inhibitors [BR:
dcr01002
]
Metallo peptidases
Family M67
108227919
Membrane trafficking [BR:
dcr04131
]
Endosome - Lysosome transport
Others
Others
108227919
Ubiquitin system [BR:
dcr04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
108227919
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
JAB
USP8_dimer
Prok-JAB
pre-PUA_NIP7
Motif
Other DBs
NCBI-GeneID:
108227919
NCBI-ProteinID:
XP_017258801
LinkDB
All DBs
Position
6
Genome browser
AA seq
537 aa
AA seq
DB search
MKPSSVRINVAASTKVLDVDNRISLRYYFRIADNVLKQANIFRAEKNYIDLYIMLLRFSS
LVTETIPRHRDYRASSQAEKNYLKKKSLEAVIELESLKPTVERKIDELSRKHTHHIRAPQ
NNSFGSSQEWPSVKKQNSNMYVNIKAQQPAAPEYAYQNQIQQFSHASSGEPQFRRLSLSI
PLPKEETLSRHSILGPNGLRGQWQPPTSFKGISYPSNIDLTPVEIPRLDSLPRSDLSRDN
SKQHLLENGNLLKKDSSILSDLETTLPSNNDNKMPHTEELGSLKPLNNDIKMPQAEELGS
LISFDTVEPPAQVNLIRQPSPPPVLADVQDLIPTTLPPVTEAEYGREDPSSDGLACSESP
MELHISTTMMESFMKLAKSNTNKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQAT
NEEEIFEVQDTRSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPKDSSR
NHGIFRLTNPGGMGVIRNCPRRGFHSHDPPSDGSPIYKQCTDVYLSPNVKFDVIDLR
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgaagccttcgtctgtgcgaatcaacgtcgccgccagcacgaaagtcctcgacgtcgat
aatcgcatctcgctgcggtattacttcagaattgccgataatgtcctcaagcaggccaat
atatttcgagctgagaagaattatatagatctctatattatgctcctgaggttttctagt
ttggtgacagaaacaataccacggcatcgtgattatagagcatcttcacaagcagagaaa
aactatctcaagaagaaatcattggaagccgtaattgagctagagagcttgaagcccaca
gtcgaacgtaagattgatgagttaagcaggaaacatacccatcatataagagcacctcag
aacaattctttcggttcttcacaggaatggccgtccgttaagaaacaaaattcgaatatg
tatgtcaatattaaggcacaacaacctgctgcaccagaatatgcatatcaaaatcagatc
cagcagttctcacatgccagttcaggcgaaccccaatttcgaagattatcattaagtatc
cctcttccaaaggaggaaacactttctagacattctatattaggtccaaatggacttcgt
gggcagtggcaaccccctacaagttttaaagggataagttatccaagcaatatagacttg
acaccggtggaaatcccaaggttagactccctacccagaagcgatctttcaagggataac
agcaagcaacatctattggaaaatggaaatttgcttaaaaaagattctagtattttatca
gatttagaaacaacgttgccatccaacaacgataataagatgcctcatactgaagaactt
ggctctctgaagccactgaacaatgatataaagatgcctcaggctgaagaacttggttca
ttgatttctttcgacacagtagaacctcctgcgcaggtaaatttgatcagacagccttct
cctccccctgttcttgcagatgtacaggatttaatccctacaacattaccaccagtcact
gaggcagaatatgggagagaggatccctcttctgatggtttagcttgttcagaatctccc
atggagttacatatttcaacaacgatgatggagagtttcatgaagctggcaaagtcaaat
accaacaagaacttggaaacctgtggaattttggcaggatcacttaaaaaccgcaaattt
tatataaccgctcttatcatcccaaagcaagaatcaacttcagactcgtgtcaggccaca
aatgaggaagaaatatttgaagtgcaggacacacggtctctttttcccctaggatggatt
catacgcaccccacacagtcttgtttcatgtcatcaatagatgttcatacccattactcc
tatcagatcatgttgccggagtctgtagctattgttatggcgccaaaagatagctctagg
aaccatggtatattccgattaaccaatccagggggcatgggggttatacgaaattgtcca
cgccgtggctttcattctcacgatccaccatccgatggtagtccaatatacaaacaatgt
acagatgtttatttaagtcccaatgtaaagtttgatgtcattgatctacgttga
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