Daucus carota (carrot): 108227931
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Entry
108227931 CDS
T05350
Name
(RefSeq) mRNA-decapping enzyme-like protein
KO
K12611
mRNA-decapping enzyme 1B [EC:3.-.-.-]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108227931
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108227931
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108227931
mRNA degradation factors
5'-3' decay
Decapping complex
108227931
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCP1
HTH_9
Motif
Other DBs
NCBI-GeneID:
108227931
NCBI-ProteinID:
XP_017258820
UniProt:
A0AAF0XFS3
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Position
6:32684393..32691470
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AA seq
362 aa
AA seq
DB search
MSNPTKLTPHLNHQSTNMLNLTVLQRMDPFIEEILITAAHVTLYDFNIELNHWNRKDIEG
SLFVVKRNTQPRFQFIVMNRRSTENLVENLLGDFEFELQVPYLLYRNASQEVNGIWFYNP
KECEDVANLFTRILNAYAKVSPKPKISSNKSEFGELEAAPTAAVIEASLEQSFPAASVYV
PEDSSFLNLFNAATSIGQSSTNVANSGQLGPIPVSSRVPIAVPAPAPSLQIPTHPKSVLA
SSQVLVDMNTDPVNSNNQVTSLLTPSSFFIPSSSSGQSTQLVAISMPTAIHPHPNVQRSH
GVPMLQPFPPPSSPVSFTPVTYPPPNHGSLSRDQVRDALMALVQENQFIEMFYQALLKVR
QS
NT seq
1089 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatcccacaaaattgacgcctcacttgaaccatcagagcaccaacatgctcaat
ctcactgttctccagcgtatggatcccttcattgaagagattctcatcactgctgctcat
gtcactctctacgatttcaacatcgaactcaatcactggaatcgcaaggatattgaaggt
tccctctttgttgtcaagaggaacactcaaccgcgattccagttcattgttatgaaccgg
cgaagtacagaaaatcttgtggagaatctcctaggagactttgagtttgaacttcaagtt
ccatatttgttgtatcgcaatgcatctcaggaagtgaatggaatttggttctacaaccca
aaggaatgcgaggatgttgctaatctctttactaggatacttaatgcatatgctaaggtt
tctcccaagcctaaaatatcttcaaacaagagtgagttcggggaactggaagcagcacct
accgctgcagttattgaagcttctctggagcaatcttttccagcagcatctgtatatgta
cctgaggattcttcctttttaaacttgttcaatgcagccacaagtattggacagagttct
acaaatgtcgctaactctggacagctgggccccatccctgtgtcatctcgtgttcccatt
gctgtccctgctcctgcaccatcccttcagatcccaacccatcctaagtctgttctggcc
tcatctcaagttctagtagatatgaatactgacccagtaaacagcaacaatcaggtcacc
agccttctcacgccctcttccttctttataccatcctcttcgtctgggcagtcaactcag
cttgtagctatatctatgccaactgctattcaccctcacccaaatgtacaacgctctcat
ggcgttccaatgcttcaaccttttccaccaccctcatcaccagtctcttttactcctgtc
acataccccccaccaaatcatggatcattaagtagagatcaagtccgcgatgcgcttatg
gcacttgttcaggaaaatcagtttatcgaaatgttctaccaggcgttgctaaaagtgcgt
caatcatag
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