Daucus carota (carrot): 108227979
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Entry
108227979 CDS
T05350
Name
(RefSeq) SWI/SNF complex subunit SWI3B isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108227979
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dcr03021
]
108227979
03036 Chromosome and associated proteins [BR:
dcr03036
]
108227979
Transcription machinery [BR:
dcr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108227979
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
108227979
PBAF complex
108227979
GBAF(ncBAF) complex
108227979
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
SWIRM-assoc_1
Motif
Other DBs
NCBI-GeneID:
108227979
NCBI-ProteinID:
XP_017258895
UniProt:
A0AAF0X8V9
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Position
6:complement(5341106..5352620)
Genome browser
AA seq
474 aa
AA seq
DB search
MAMPSGPAVTPPPPSGAGASNNGDSHLKLPILTPSRPSDVILIPSYSRWFSWKNIDECEV
RNLPEFFEERSASKNPRVYKYYRNSIIQSFRLNPTRKITFTEARKTIIGDVGSVRRVFDF
LEAWGLINYFGAPSSKPQKLEDKDISKSSNDGGAVPTAADSTPSKKRVCGICKSVCTIAC
FARDKDDVTLCARCFVRGSYKVGPGSSDFRRVEISDEEKTDWTDKETLHLLEAIMHYRDD
WKKVAEHVNGRTVRECVSHFVKLSFGEQFAGPLDSAEVNDNIIQSTGHTGTEPVSQTSTV
PPAKKMRLSPLADSSNPIMAQAAFLSALVGVDVAEAAAHAAILALHDDFNGTNFKEKIGS
CTGGNTRHEEPCLESDRDAPTVAPIEAFDEARLQLTKEEAELERSISGISVQMEEFQNKM
MQFGKFDLEVEKESKQLEQLTNLLFADQLALHFHKKAGSKSHAVPEDFKAGQTL
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atggcaatgcctagtggtccagcagtaacaccaccgcccccgagcggcgcaggtgcatct
aataacggcgattcacatctcaagctccccattctcaccccctcccgtccatctgacgtc
atcctcatccccagctattcccgatggttttcctggaaaaatattgatgaatgtgaagta
aggaatttacccgagtttttcgaggagaggtcagcttcgaagaatcctagggtttacaag
tactacagaaattccatcattcaaagcttcagactcaaccctacccgcaaaattactttc
accgaggctcgcaaaactattatcggggatgttggttctgttcgccgggttttcgatttc
ctagaggcttggggtttgattaattactttggtgccccttcttctaaacctcaaaagttg
gaagacaaggatatctcaaagtcttccaatgatggtggggcagtgccaactgctgctgac
tctacgccctctaagaagagagtttgcggtatttgcaagtctgtttgcaccattgcttgt
tttgctcgtgacaaggacgacgtgactctttgtgcaagatgctttgttcgtggtagttac
aaggtaggaccggggtcttcagatttcagaagagttgagataagtgatgaggagaaaaca
gactggactgacaaagaaacactgcaccttcttgaagctattatgcattatcgagatgac
tggaagaaggttgcagaacatgtcaatggtagaactgtgagagaatgtgtcagccatttt
gtaaagctttcttttggggagcaatttgctggacctctagattctgctgaggtcaatgat
aatataattcagtcaactggccacaccggcacagagcctgtgtcacaaacctctacagtc
ccaccggccaaaaagatgcgtctcagtccccttgcagactcaagcaaccccatcatggct
caggctgctttcctctcagctctggtaggcgttgatgtggcggaagcagctgctcatgct
gctatattggctttgcacgatgactttaatggtaccaattttaaggagaagattggatct
tgtactggtggtaatactagacacgaagaaccgtgtcttgaatctgaccgtgatgccccc
acagttgctcctatagaagcctttgacgaggcacggttgcagcttactaaggaggaagct
gagttagaaagatcaatatctggcatatcagtgcagatggaggaattccaaaacaagatg
atgcagtttggaaagtttgatttagaagtggagaaagagtccaaacagctagagcaactc
actaatctactatttgctgatcagctagcccttcattttcataaaaaggcaggatcaaaa
tcgcatgcagtacctgaagatttcaaagcaggacagacattatga
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