Daucus carota (carrot): 108228036
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Entry
108228036 CDS
T05350
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr04120
Ubiquitin mediated proteolysis
dcr04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
108228036
04120 Ubiquitin mediated proteolysis
108228036
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dcr04121
]
108228036
Enzymes [BR:
dcr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108228036
Ubiquitin system [BR:
dcr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108228036
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
FlxA
zf-ANAPC11
Nuf2_DHR10-like
zf-RING_16
zf-RING_11
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
108228036
NCBI-ProteinID:
XP_017258984
UniProt:
A0A161ZYC8
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All DBs
Position
6:35878432..35885149
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AA seq
542 aa
AA seq
DB search
MMRLQTYAGVSLIATLAVVYHAFSSRQQFYPAMVYLSTSKVSLVLLLNMGLVVMCILWQL
TKKIFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLSMVTALLLIKALHWLA
QKRVEYIETTPSVPMLSHIRIVSFMGFLFLLDSLFLYNSVKYLIETRQASVSLFFAFEYM
ILATSTVSIFVKYIFYVSDMLMEGQWEKKAVYTFYLELIRDLLHLSMYLCFFLVIFMNYG
VPLHLIRELYETFRNFKIRVADYIRYRKITSNMNDRFPDATPEEIDSSDATCIICREEMT
TAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPSENGASPAGSHANVHQHGTNMSNSP
SQGSTGDGAPNANISPQQARLRAAAAAAAIYEKSFVYPSPSTLVWSPGYALPVQTDRTVA
GSSTGNSNGETISGHNTLKPQFATVGGPADFSFQKPTISSYQASDIDVKFEQYFGSNISD
SQLEGQRKLIQRQIEVLQEQLQLLQKPNAEKSTEMDQTTAADKKGKGLASSSSSSSDSDR
ED
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggttacagacgtacgcaggggttagcttgattgctaccctggcggttgtttat
catgcttttagtagtcggcagcagttttacccggcaatggtttatttatcaacttctaag
gtcagtttggtgcttctactaaatatgggcctggttgtgatgtgcatattgtggcaactg
actaagaagattttcctggggtcgctccgtgaagcggaggttgaaaggcttaatgagcag
tcgtggcgggaagtgatggagatactctttgctattactattttcagacaggacttttcg
gttacttttctttctatggtcacggctcttttgttgataaaggctttgcattggttggct
cagaagagagttgaatatattgaaacgacaccgtcagttcccatgttgtctcatattcga
atagtctcgttcatgggattcctttttctacttgacagtctctttttgtataattcagtg
aagtatctaatagagacccgccaggcatcagtttctctcttttttgcctttgagtacatg
atattggcaacatcaacggtatcaatatttgtaaaatatatattctatgtcagcgacatg
cttatggaaggacagtgggaaaaaaaggccgtctatacattttatttggaactgattcgg
gacttactgcacttgtctatgtacttgtgtttcttccttgtgattttcatgaactatggt
gtgcctcttcatttgattcgggagctttatgaaactttccgtaacttcaaaatccgtgtt
gctgattacattcgttaccggaagatcacttccaacatgaatgaccgttttccagatgct
acaccagaagagatcgactctagcgatgcaacctgcattatctgtcgtgaggagatgaca
acagccaagaagttaatctgtggtcatcttttccatgttcactgcctccggtcatggtta
gagaggcaacacacttgtcctacttgcagagcccttgttgtaccatctgaaaatggggca
agtccagctggttcccatgctaatgttcaccaacacggaacaaacatgtcaaattcgcct
tctcagggctcaactggtgatggtgctccaaatgctaatattagcccacaacaggccaga
ctacgggctgctgctgccgctgctgcgatatatgaaaagtcttttgtatacccatctccg
agtacgctagtctggtctcctgggtacgctttacccgtgcaaacagaccgaactgtggct
ggctctagcactgggaattccaatggagaaacaatttctggacacaatacactgaaacct
cagtttgcaaccgttggtggacctgcagatttctcttttcagaagcccaccatcagttcc
tatcaggcttctgatattgatgtgaagtttgaacagtattttggtagcaatatatcggac
tctcaactggaagggcaaagaaaactaattcaaaggcaaattgaggttttgcaagaacaa
cttcaacttctacaaaagccaaatgccgagaaaagcacagaaatggatcaaacaactgct
gctgataaaaagggaaaggggcttgcatcatcgtcgtcttcctcatctgattcagatagg
gaagactga
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