Daucus carota (carrot): 108228039
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Entry
108228039 CDS
T05350
Name
(RefSeq) protein PAT1 homolog
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108228039
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108228039
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108228039
mRNA degradation factors
5'-3' decay
Decapping complex
108228039
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
108228039
NCBI-ProteinID:
XP_063935670
LinkDB
All DBs
Position
6
Genome browser
AA seq
756 aa
AA seq
DB search
MEEFQGGDSTPQPIDSNSLFDASQYAFFGNDAVEEVELGGLEDEEEDEIEYVPAGGVVDD
VEQLDRDELNKAVSISGSADGTNDWGSRGSSFAQEWLLPELESPNLYNQHPGESYLLHRT
SSYPEQQQQHIFQHQHFSSEPNFGPKSSFTSHPPPGGRSLQPLSNQLHNSNIHHLPGGNQ
LQLNAPSHLPFSSSQLQFTGSPHGSPFGEHLSQLALRAHPVDSQLQNQYINRTGSYPGDN
SLLTNKSLHQQLPNLNGLMPPQLMQQHRMHRQFQPSFGHVSGLQRQPNNRHLPPAHHMMN
NFEMLGSTDLRDQKPKLFLKGRQGIPYSNHGFDASNQWNDSGWPRFRAKYMSADEIENIL
RAQLAATHINDPYVDDYYHQACLAKKSTGAKLRRHFCPANLKDHPSRARVDNEPHPFLKV
DALGRVCFSSIRRPRPLLEVDPPNSSGTDSTDQKGMEKLGEKPLEQEPMLAARVTIEDGL
SLLLDVDDIDRYLQFNHLPDVVVQLRGRRQVLLEDLQSSLQLVDPLGENGNTVNLSPEDD
LVFLRLVSLPKGRKLLCRYLQLLFSSAELIRVVCMAIFRHLRFLFGTPSADPKTAETTTN
LVKIVSSCVRGMDLRALGACLASVVCSAEHPPLRPLGSSAGEGASVILISALERATELLR
DPHTSANCSIPNRKFWQASFDVFFNLLTKYCISKYDTTVQSLLAQGLADTSTIGSETTKA
MSREMPVELLRASLPHTNEQQRKVLLDFAQRSMPML
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atggaagaatttcagggcggagattcaactccgcagccaatcgattcgaattcattgttt
gatgcatctcagtatgcctttttcggaaatgatgccgtggaggaagttgagctgggagga
ttagaagacgaagaggaagatgaaattgagtatgttcccgcgggtggagttgttgatgat
gttgagcagttggatagagacgagttgaacaaggcagtcagcatttcaggaagtgcggac
ggtactaacgattggggatccagaggaagttcatttgctcaggagtggttattaccggag
ttggaatctcctaacttgtacaatcagcatcctggggaatcatatcttttgcacagaaca
tcttcgtatcctgagcagcagcagcaacatattttccagcaccagcacttctccagtgaa
ccaaattttggtccaaaatcatcttttacttctcatccaccccctggaggcagatctttg
caacctttatccaaccagctacacaattccaacattcatcatctaccaggtgggaaccaa
ctgcaacttaatgcacccagtcatcttcccttctccagttcccagctacaatttactgga
tctcctcatggttctccattcggtgaacatctgtctcagttagctcttcgtgctcatccc
gttgacagtcaactgcaaaaccaatatatcaaccgcacagggtcatatcctggagataat
tccctcctcacaaacaaaagcttgcatcaacagttacctaatctaaatggtttaatgcct
cctcagttaatgcaacaacatagaatgcaccgtcagtttcagccttcatttggccatgta
tcaggattgcagcggcagccaaataatcggcatcttcctcctgctcatcatatgatgaat
aattttgaaatgcttggatctactgatttgagagatcaaaaacccaagttgttcctaaaa
ggaaggcaaggtatcccttattcaaaccatggttttgatgcaagcaaccaatggaatgat
agtggatggccaaggtttagagccaaatatatgagtgctgatgaaatcgagaacattctg
agagcgcagctagctgctactcatattaacgatccatatgttgatgactactaccaccaa
gcttgcctagcaaagaaaagtactggtgctaaattgaggcgccatttttgccctgccaac
ctcaaggatcatccttcccgtgctcgagttgataatgagcctcatccctttctcaaggtt
gatgctcttgggcgggtttgcttctcttctattcgaagacctcgcccacttcttgaagtt
gacccaccaaattcatcagggaccgacagtactgatcaaaaaggaatggagaagctaggg
gagaagcccttggaacaggagccaatgcttgcagccagagtaacaattgaagatggcctt
tctcttctccttgatgttgatgatattgacaggtacctacagttcaatcatctcccagat
gttgtggtgcagctaaggggacgtcggcaggtcttgcttgaggatcttcaatcatcactt
caacttgttgacccgcttggtgaaaatgggaacactgtaaatttgtctcccgaagatgac
cttgttttccttcgattagtctctcttccgaagggccgaaagctcctatgcaggtacctt
cagctcctcttttctagcgctgaactcattcgggtagtatgtatggccatatttcgtcat
ttgagatttttgtttgggaccccgtccgctgaccccaagactgctgaaacaactaccaat
cttgtgaaaattgtttcatcctgtgttcgtggaatggaccttcgagcactcggggcttgt
cttgcttcagttgtttgttctgccgagcatccacctctcagaccccttgggagctctgca
ggagaaggtgcttctgttattctgatatctgcacttgaaagggctactgaactcctaaga
gatcctcatacttctgcgaactgcagtatcccgaatagaaaattttggcaggcttctttt
gatgtatttttcaaccttcttacaaagtactgcatcagcaagtatgacactaccgtgcaa
tctcttcttgcacagggtcttgcagatacgtctactataggttcagagacaacaaaagct
atgagcagagaaatgccggtagaacttttacgtgcaagtctacctcatacgaatgaacaa
cagaggaaggttttgttggactttgcacagcgatcgatgcctatgctttga
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