Daucus carota (carrot): 108228115
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Entry
108228115 CDS
T05350
Name
(RefSeq) uncharacterized protein LOC108228115 isoform X1
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108228115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108228115
03400 DNA repair and recombination proteins [BR:
dcr03400
]
108228115
Enzymes [BR:
dcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
108228115
Messenger RNA biogenesis [BR:
dcr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
108228115
DNA repair and recombination proteins [BR:
dcr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
108228115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
HTH_40
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-GeneID:
108228115
NCBI-ProteinID:
XP_063942295
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All DBs
Position
1:complement(56112463..56124971)
Genome browser
AA seq
896 aa
AA seq
DB search
MESVLKKHFGYSAFRPYQKQIIEHILDGNDSLVVMATGSGKSLCYQVPPLISNKTAVVIS
PLISLMQDQVMALKQRGIRAEYLCSAQIDSTVQSKAESGIFHILYMTPEKASSVSNSFWS
KLLNVGICLLAVDEAHCISEWGHNFRVEYKQLDKLRDVLINVPFVGLTATATEKVQSDII
QSLKLKDPYLAVGSFDRKNLFYGVKTSNHGSSSVFEFVEEILKCVASSGSIIIYCTSIKD
VEQISKSLLEAGVKSGIYHGRMASKAREESHRLFIRDEIQIMVATIAFGMGIDKPDVRHV
LHYGCPKSLESYYQESGRCGRDGIASNCWLYYNRSDFAKADFYCREAQSESQRKAIMESF
MAAQQYCMLRTCRRKYLLEYFGEICAYENCGYCDNCTIPKKEIDVSKQAFLLMACIKSCG
GRWGLNLPVDVLRGSRSKKIVDARYDKLPFHSLGKEVSANWWKILASQLISFGFLTENLK
YKTISVSPEGMNFLSSCTPDHQPPLLLPVGEEEQQNAIGGGRDFNMDFLKSEGLSQEELE
LYKMLLGERMSLARAAGIAPYAICGDQTIKKFVLTRPSTKARLANIDGVNQHLLGKYGDR
ILQSIRDLSKGLGLSLDVVSTLQVVNNQKICTASYHPKELAPARFQAWKMWHEDGLSFQK
IANFPGRSAPIKEQTVVGYVLDAAREGCVMDWMRFSGEIGLTEDAFINIEAAILKVGSKD
KLRPIKDELPEEVSYTHIRTVLAMQDLGLTRDALLANHRPSNEANDCSIETVEIPKQSYI
SSHVESKICELKEPVNCMAEHLSSQGESKAVSGMQDFDDQHSLRKRQKVDPHKNLISVKA
TEDSIIEWLGNFENGISLSDIVEHFKGSTAESVAHLLSCLESEFVIYKKNDHYKLL
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
atggagtccgttcttaagaaacattttggctactcagcattcaggccgtatcagaaacag
attattgagcatattctagacggaaatgactctttggtggttatggctaccggcagtggc
aagtcattgtgctatcaggttcctcccttgatttcaaataagactgctgtggtcataagc
cctcttatttccctaatgcaagatcaggtaatggcactcaaacagagaggaattagagct
gagtatctctgcagtgctcagatcgactccactgttcaaagcaaggcagagtctggcatt
ttccatatcctctacatgactcccgaaaaggcttcttctgtttccaacagcttttggtct
aaacttctaaacgttgggatatgtcttttagccgtcgatgaagcccattgcatttcagag
tggggtcataatttcagggtggaatacaagcaattagacaaattgcgtgatgttctcatc
aatgttccatttgttggattaacagcaactgctacagaaaaggtgcagtctgatattatc
cagtcgcttaagctgaaagatccatatcttgctgttggctcattcgatcgtaaaaatcta
ttttatggagtcaaaacttctaatcacggttcatcatctgtgttcgagtttgtggaggag
atcttaaaatgtgtagctagttctggttcaattattatatattgtaccagcatcaaagat
gttgagcagatttccaaatcgcttctcgaggcaggagttaaatctggaatctatcatggt
cgaatggcgagtaaagctcgcgaggagtcgcacagattgttcataagagatgaaatccaa
attatggttgcaacaattgctttcggaatgggcattgataagcctgatgtcaggcatgtc
ttacactatgggtgccctaagagtctagaatcttattaccaggaaagtgggcgctgtggt
cgagatggtattgcctcaaattgctggctttattacaacagaagcgactttgcaaaagct
gatttttactgcagagaagcacagtcagaaagtcagagaaaagctataatggaatcattc
atggctgcacaacagtattgtatgctgagaacttgtagaagaaagtatctgttggagtac
ttcggcgagatctgtgcatacgagaattgcggatactgtgataactgtaccatccccaaa
aaggagattgacgtttctaaacaagcatttttacttatggcctgcattaagtcatgtggg
ggtcgttggggacttaatcttcctgtagatgtgcttcgtggatctcgatcgaaaaaaatt
gtcgatgctcgatatgacaagcttccgtttcatagcctaggcaaggaggtttcagcaaac
tggtggaaaattcttgcttcacaactgatttcatttggtttcttgacagagaatcttaaa
tataagactatcagtgtcagtccagaggggatgaattttttgagctcttgtacgcctgat
catcaaccaccattgcttttaccagttggtgaagaggagcagcaaaatgctattggtgga
ggtagagacttcaacatggatttcctgaaatctgagggattatcgcaggaggagttggaa
ctctataaaatgcttctgggagagagaatgagcctggctagagctgcaggaattgctcca
tatgctatatgtggcgatcaaacgataaagaagtttgtattgacgaggccatctactaaa
gcgaggctagcaaacattgatggagtcaaccagcaccttttgggtaagtatggagatcga
attctgcaaagtatccgagatctatccaaaggtcttggcctatcattagatgtagtatca
actctgcaagtcgtaaacaaccaaaagatttgtaccgcatcatatcacccaaaagaattg
gcgccagctaggtttcaggcctggaaaatgtggcacgaggatggtttgtcatttcagaag
atagctaacttccctggtagatcagctccaataaaagaacaaactgtagttgggtatgtc
ctcgatgctgctcgagaaggatgtgttatggactggatgagattttccggggaaattgga
ttaacagaagatgcattcataaatattgaagcggccatcttgaaagttggctcaaaagac
aagttaagaccaatcaaagatgaattacctgaagaggtaagttatacccatattagaacg
gtattggcaatgcaagatctgggattgaccagagatgcactcttagccaatcaccggcct
agtaatgaagctaatgattgctctattgagacggtagagatacccaaacaatcatatatt
tcaagtcatgtagagagtaaaatctgcgaactcaaggaaccagtaaattgtatggcggaa
catctatcttctcagggggaaagcaaagcagtttccgggatgcaagacttcgatgatcaa
cactccttgaggaaacgtcaaaaagttgatcctcacaagaatttaatttctgttaaagcg
acagaagattccattattgagtggctcgggaattttgaaaatgggatttctctgtcagat
attgtggagcactttaaaggatcgacagcagagtctgttgctcatttgttgagctgtcta
gaaagtgagttcgttatatataaaaagaatgaccactataagcttctgtga
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