Daucus carota (carrot): 108228176
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Entry
108228176 CDS
T05350
Name
(RefSeq) WD-40 repeat-containing protein MSI2
KO
K10752
histone-binding protein RBBP4
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03082
ATP-dependent chromatin remodeling
dcr03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108228176
03083 Polycomb repressive complex
108228176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dcr03036
]
108228176
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
108228176
Histone modification proteins
HAT complexes
HATB complex
108228176
HDAC complexes
Sin3A-HDAC complex
108228176
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
108228176
PRC2.2
108228176
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
108228176
Heterochromatin formation proteins
Other heterochromatin formation proteins
108228176
Chromatin remodeling factors
NuRD complex
108228176
NuRF complex
108228176
NuRF complex (fruit fly)
108228176
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
CAF1C_H4-bd
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
WDR55
EIF3I
WD_LRWD1
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
WD40_RFWD3
Beta-prop_EML
eIF2A
MIOS_WD40
Beta-prop_HPS5
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_NUP159_NUP214
Beta-prop_RIG_1st
Beta-prop_SPT8
Beta-prop_DCAF12
DUF6922
WD40_MABP1-WDR62_1st
Motif
Other DBs
NCBI-GeneID:
108228176
NCBI-ProteinID:
XP_017259179
UniProt:
A0AAF1B416
LinkDB
All DBs
Position
6:8291582..8298005
Genome browser
AA seq
400 aa
AA seq
DB search
MSAGGEDEREEYQVEEEFSVWKKNTPFLYDLILSHSLEWPSLTVHWLPSTPSTYADDTYA
IHKMILGTHTSEDFPNFLLVADAHLPLHPASVPNTNIEDPILPKVEIKQKIHVDGEVNRA
RCMLQKPFVVAAKTSNADVYVFDCTKQPMDHQGGSCDPDLRLRGHDKEGYGLSWSPFKEG
YLLSGSNDCKVCMWDISAMPQEKVLDACNVYKEHGSLVNDVSWHSENENLFGSVGDDCRL
MIWDLRATKPQQSVAVHEKEVNYLSFNPHNDYVLATASSDATVGLFDLRKLSIPLHILSS
HAEQVFQVEWDPNHETVLASSSADRRLMVWDLSRIGDEQLEGEAEDGPPELLFSHGGHKA
NLSDFSWNKNEPWVISSVAEDNTLQIWQMAESIYREDDDI
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcaggaggagaagacgagagagaagagtaccaagtagaagaagagttcagcgtg
tggaagaagaacaccccatttctctacgatttgattctctctcactctctggaatggcct
tctctcactgtccactggctcccttccaccccttccacttacgccgacgacacctacgcc
atccacaagatgattctcggcacccacacttccgaagatttccccaatttcctcctcgtt
gctgatgcccatttgccgctccatcctgcttccgtccccaacacgaatatcgaagacccc
attcttcccaaggtggagataaagcagaaaatacatgttgatggagaggtgaacagagca
cgttgcatgctgcaaaaaccattcgttgttgcggcaaagactagtaatgctgatgtgtac
gtatttgactgcactaaacaaccgatggatcatcaaggagggtcttgtgatccagatttg
aggttgaggggtcatgataaagaagggtatggattgtcatggagcccatttaaagagggg
tacctcttgagtggttcaaatgactgcaaagtttgtatgtgggatatttcagcaatgccg
caagagaaagtgctagatgcatgcaatgtttataaggagcatggaagtttggttaatgat
gtttcatggcactcggagaatgaaaatttgtttggctctgttggagatgactgtcggcta
atgatttgggatctacgagctaccaagccccaacagtctgtagctgttcatgaaaaggag
gttaactatttatcattcaatcctcacaatgattatgtattggctacagcgtcttcagat
gcaactgttggtttgtttgacttgcgaaaattgtcaatacctttgcatattctcagtagt
catgcggagcaagtattccaggtagaatgggatccgaatcacgaaactgtgttggcatct
tcttcagctgataggaggttgatggtctgggatctaagcaggataggagatgaacagctg
gagggagaagcggaagatggtcctcctgagcttctcttctctcatggtggccacaaagca
aatttatcagatttctcgtggaacaagaacgaaccatgggttatatcaagtgtagccgag
gacaatactcttcaaatctggcagatggctgagagcatctatcgtgaggatgatgacatt
tga
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