Daucus carota (carrot): 135147374
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Entry
135147374 CDS
T05350
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr00040
Pentose and glucuronate interconversions
dcr01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
135147374
Enzymes [BR:
dcr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
135147374
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Gene cluster
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
v110
Motif
Other DBs
NCBI-GeneID:
135147374
NCBI-ProteinID:
XP_063936770
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Position
6:24229950..24232087
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AA seq
404 aa
AA seq
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MSSLPFSFIFLCLLSTQCLLVCSSTLQDPEIVVEDVHRSINNASRRQLGYLSCATGNPID
DCWRCQHDWEQNRYRLADCAIGFGKNAIGGKNGKIYVVTDSGNDDPVNPKPGTLRHAVIQ
DEPLWIIFKRDMVIKLKQELVMNSFKTIDGRGASVHIANGPCIKIHYVTNIIIHGIHIHD
CKQGGNADIRDSPHHSGWWTVSDGDAVSILGGSHIWVDHCSLSSCEDGLIDAIHGSTAIT
ISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLIQRMPRCRHGYFHVVNNDYT
HWEMYAIGGSAAPTINSQGNRFLAPNLRSNKEVTKHEDAGEGEWRHWNWRSEGDLMLNGA
YFRESGASSHSFARASSLNARPSSLVASMTTSSGALNCRKGSHC
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagcctacctttctcattcatcttcttgtgcttgctctcaactcaatgtcttctt
gtttgttcttccacacttcaagatcctgaaatcgtggttgaagatgtccacaggagcatt
aacaatgcctcgaggaggcagctaggatatctgtcgtgtgcaacaggcaaccccattgat
gactgctggcgctgccagcacgactgggaacagaaccggtatcgtctagccgattgtgca
attggctttggcaaaaatgcgattggagggaaaaatgggaagatctacgtggtcaccgac
tcggggaacgatgatccggtgaaccctaagccaggcacgcttaggcacgcagtgatccag
gacgagcccttgtggatcatcttcaaaagagacatggtgatcaagttgaagcaggagctt
gttatgaactcattcaagacaattgatggcaggggagctagtgtccacattgctaatggg
ccgtgcattaaaattcactatgttacaaatattataatccacggcattcatattcatgat
tgtaagcaaggtggaaatgccgatataagagactccccgcaccattcggggtggtggact
gtctcggatggtgatgcggtgtcgattttaggtggaagtcatatctgggtagatcattgt
tcattgtctagttgcgaagatggactgatcgatgcgattcatggatccacggccatcaca
atttctaacaactatatgacacatcacgacaaggttatgctgttggggcacagcgattca
tatacgcaagataaaaatatgcaggttaccattgcgtttaatcactttggtgaaggcctt
atccagaggatgcctaggtgcagacatgggtactttcatgtggtaaataatgactatacg
cattgggaaatgtatgcgattggtgggagtgcagcccctaccataaatagtcagggaaac
agatttctggcacccaatctcagatccaataaagaggtgacaaagcacgaggatgcaggg
gagggggaatggagacactggaattggaggtcagaaggggatttaatgctcaacggggca
tatttcagagagtcaggggcatcatcgcactcgtttgcaagagcctcgagcttaaatgca
agaccatcgtccctcgtggcttctatgactacttcatctggtgcacttaattgccgaaag
ggctctcactgctag
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