Dyella caseinilytica: ISN74_08060
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Entry
ISN74_08060 CDS
T07062
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dcs
Dyella caseinilytica
Pathway
dcs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ISN74_08060 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcs03019
]
ISN74_08060 (rne)
03009 Ribosome biogenesis [BR:
dcs03009
]
ISN74_08060 (rne)
Enzymes [BR:
dcs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ISN74_08060 (rne)
Messenger RNA biogenesis [BR:
dcs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ISN74_08060 (rne)
Ribosome biogenesis [BR:
dcs03009
]
Prokaryotic type
rRNA processing factors
ISN74_08060 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF4901
Motif
Other DBs
NCBI-ProteinID:
QRN55269
UniProt:
A0ABX7GZL8
LinkDB
All DBs
Position
complement(1826411..1829614)
Genome browser
AA seq
1067 aa
AA seq
DB search
MKRMLINATQREELRVAIVDGQTLYDLDIEIPSREQKKANIYKGRITRVEQSLEACFVDY
GAERHGFLPLKEIAREYFTPGLDPYKSNIRELLKEGLEVVVQVEKEERGNKGAALTTFIS
LAGRYMVLMPNNPKAGGVSRRIEGEDRQALKEALEHLTVPDDMGLIVRTAGMGRDAEELQ
WDLDYLIQLWKAISSAAQAQKAPFLIYQESKLFIRALRDYLRNDIGEILIDEESLYNDAR
EFVQQVMPNALRKLKLYKDDTPLFSRYQIETQIESAFDRSVRLPSGGSIVIDQTEALTAI
DINSSKATKGGDIEETAFNTNLEAATEIARQLRIRDAGGLIVIDFIDMDSPKHQREVEER
LKEASKLDRARIQIGRISRFGLMEMSRQRLRPSLGEATQIVCPRCDGHGHIRSVESLSLS
TLRLIEEHAMKDNTGQVLVQAPASVANFMLNEKRASVVEIELRNKVHVVIVADDKLDTPH
IEIQRIREVDMGEHSKPSYERLTAEEPTSIRKMGQALGSTEQPAVSGIVPASPAPVREDE
PAAAAPAPAPATKRQPVAATAPALKSNGKGNGGFFSRLFGGLFRGGDETAAPAPAPAPVA
RQETQRGRQQDNRRNEQRNRADGAPRQQREQQGAGARGNAQQQGQGKNPNQRQRNEQQAQ
GRQQQPQQQGNKQEQRQPKQTQANEAANAEQRNKQQNAQAAKQPQQERQQRQPQAERAPQ
AERPQQAAGANSPAPAQATEIPKPTAETVVAVATVAEGVQNAAAETLEAGQSRRRRGRRG
GRRRRRHDSATATGAVANEQLGDVLDDEDRDEGDDAPEAIHVPEAKPEPLTVESPRAEVP
SRVEAPVQKLATEVTAAEASVAAIEAPQPATFPTTEADAVKASVETETHHAPAAEEHTAV
PVIIAPAPVAASFNLPVLPPIPVREAAETVPAPVVSEAVAEQKAETPATPSEVVTVAVSH
DNDVTLAVNEAHVTAPVAPIVINEVAPVIKPVVEAAEDAPAPVTEIVTPAPVAPAPLFHQ
PEQGDLLSQPLRHHASAQPEHGHQEAKEEPASNEDAPPHEQHDNRLS
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgatcaacgcaactcagcgtgaggagttgcgtgtggccatcgttgat
ggccaaaccctttacgatctcgatattgaaatcccctcccgcgaacagaaaaaggccaat
atctacaaaggccgtatcacgcgcgttgagcaatccctcgaagcctgctttgtcgactac
ggcgccgagcgccatggcttccttccgctgaaggaaatcgcccgcgagtacttcacgccg
ggcctggatccctacaagtcgaacatccgcgaactgctgaaggaaggcctggaagtcgtt
gtccaggtcgagaaggaagagcgtggcaacaagggtgccgccctcaccaccttcatcagc
ctggccggccgctacatggtgctgatgccaaacaacccgaaggccggcggtgtttctcgt
cgcatcgagggtgaagaccgccaggcattgaaggaggcgctggaacacctgaccgttccg
gacgacatgggcctgatcgtgcgtaccgccggcatgggccgcgatgccgaagagctgcag
tgggatctcgactacctgatccagctgtggaaggccatctcgtcggccgcccaggcgcag
aaggcaccgttcctgatctaccaggaatccaagctgttcatccgcgccctgcgcgactac
ctgcgcaatgacatcggtgagatcctgatcgacgaggagtcgctctacaacgacgcccgc
gaattcgtacagcaagtgatgcccaatgctttgcgcaagctgaagctgtacaaggacgac
accccgctgttctcgcgctaccagatcgaaacccagatcgagagtgccttcgaccgcagc
gtgcgcctgccttccggcggctcgatcgtgatcgaccagaccgaagcgctgaccgcgatc
gacatcaactcgtccaaggctaccaagggcggggatatcgaagagaccgccttcaacacc
aacctggaagcggccaccgagatcgcccgtcagttgcgcatccgcgatgccggcggcctg
atcgtgatcgacttcatcgacatggacagccccaagcaccagcgggaagtcgaagagcgc
ctgaaggaagcgtccaagctggaccgggcacgcatccagatcggccgcatctcacgcttc
ggccttatggaaatgtcgcgtcagcgcctgcgcccatcgctgggtgaggctacccagatc
gtttgcccgcgctgcgatggccacggccacatccgcagcgtggaatcgctctcgctgtcg
accctgcgcctgatcgaagaacacgccatgaaggacaacaccggccaggtgctggtgcag
gccccggcgagcgtggctaacttcatgctcaacgaaaagcgcgccagcgtggtggagatc
gaactgcgcaacaaggtgcacgtggtgatcgtggcggacgacaagctcgacacgccgcac
atcgagatccagcgcatccgcgaagtggacatgggcgagcacagcaagcccagctacgag
cgcctcactgctgaagagcccacctccatccgcaaaatgggccaggctttgggcagcacc
gagcagcccgctgtcagtggcattgtgccggccagccctgcgccagtgcgcgaggacgag
cccgcggcagcggcccctgcaccggcaccggccacaaaacgccagccggtggctgcgacg
gcacctgctctcaagagcaacggtaagggcaacggcggctttttctcccgcctgttcggc
ggtctcttccgtggcggcgacgaaaccgctgcacctgccccagcccccgcaccggtggcg
cgtcaggaaacacagcgcggcaggcagcaagataaccgccgcaacgaacagcgcaaccgc
gctgacggtgctccgcgccagcagcgcgagcagcagggtgccggcgctcgcggtaacgcg
cagcagcaaggacaaggcaagaacccgaatcagcgccagcgcaatgagcagcaagcgcag
ggccgccagcagcaaccgcaacagcaaggcaacaagcaggaacagcgtcagccgaagcag
acccaggccaacgaggccgctaacgccgagcagcgcaacaaacagcagaatgcgcaagcc
gccaagcagccccagcaagaacgtcagcagcgccagccacaggctgagcgtgcaccgcaa
gccgagcgtccgcagcaagcggctggcgccaattcgccggcaccggctcaagctacggaa
atacccaagcccactgcagaaaccgtcgttgcagtagcaaccgtagccgaaggcgtacag
aacgctgcggccgagacacttgaagcgggtcagtcgcgtcgtcgccgtggccgccgtggt
ggccgtcgccgccgccgtcacgacagtgccaccgcaaccggcgccgtagcgaacgagcag
cttggcgacgtgctggatgacgaggatcgcgatgagggcgacgacgcgccagaagccatc
catgttccggaagcgaagcccgagcccttgactgtcgagtcgccgcgcgcagaagtgccg
tcgcgcgttgaggcgccggtacagaagcttgccacggaagtcaccgcggcagaagcgagc
gttgctgcgattgaagcgccgcaacctgccacgttcccgaccacagaggccgatgcagtc
aaggcatctgtcgaaacggaaacccatcatgcaccggcagcggaagagcacacggcagta
ccggtgatcatcgcccctgccccggtagccgcttcgttcaatctgccggtattgccgccg
attccggtgcgcgaagccgctgaaacggtaccggctccggtcgtaagcgaagcagttgcc
gagcagaaggccgaaacgcccgcgacgccgtcggaagtcgtgaccgtggcggtatcgcac
gacaatgacgtcacactggccgttaacgaagcgcatgtcactgcgcccgtcgcgccgatc
gtgatcaatgaggttgccccggttatcaaaccggtcgttgaggctgcggaggacgccccc
gcaccggtcacggaaatcgtgacacctgctccggtggcaccggctccgctgttccatcag
ccagagcaaggcgacctactttcgcagccgcttcgtcaccacgcttcggctcaaccggaa
catggccaccaggaagccaaggaagaacccgcttccaacgaagatgcgccgccgcatgag
cagcatgacaaccggctctcctga
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