Dyella caseinilytica: ISN74_13815
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Entry
ISN74_13815 CDS
T07062
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dcs
Dyella caseinilytica
Pathway
dcs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dcs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ISN74_13815 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dcs03400
]
ISN74_13815 (mfd)
Enzymes [BR:
dcs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ISN74_13815 (mfd)
DNA repair and recombination proteins [BR:
dcs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ISN74_13815 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AroM
ERCC3_RAD25_C
Glyco_tran_WecG
AAA_30
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QRN52540
LinkDB
All DBs
Position
3182528..3185977
Genome browser
AA seq
1149 aa
AA seq
DB search
MPNPINHPPLPTTPKQRRFWTPPHGSARALLVAEAAQSHSGLLVVVTKDTQRAHALEDEL
RIFAGSLPVLHFPDWETLPYDVFSPHPDIVSQRIATLYQLPSVKRGVLVVSAATLMQRIA
PRTHITGSGLMLRKGQKLDLAAEQRRLEAAGYRHVPQVAEPGDFAVRGALIDIFPMGARE
PYRIELFDDEVESIRSFDPETQRSQQQVEKVELLPAREFPVTDDAAKAFRNRLRERFPID
VRRCPIYQDMKEAVTPGGIEYYLPLFFEQTATLFDYLADDALFVLGEGTGEAAEQFWTQT
AERYDQRAHDIERPVLPPAELYLSPEQLREQWNKRLRVEVVDSGHEHAVASGTQPAPEVP
LNRKGEEPGTSLRHFIENYPGRVLIAADSAGRREALLEQLAAAGLRPQNVDGWQGFLADP
NKLTITIAPLEQGFALTKPAMAVLTERELFGERVRTERRRRRGAARDPDTIIRDLTELSI
GSPIVHVDHGVGRYQGLVSMELGGMAGEFLTIEYAKGDKLYVPVAQLGLVSRYSGTAPEL
APLHSLGGDAWERARKKAAEKVRDVAAELLAIYAQREARGGESLPIDRQLVEEFGSSFPF
EETPDQLHAIDAVLGDLAAPRAMDRVICGDVGFGKTEVALRAAFAAATAGKQVAVLVPTT
LLAQQHYRNFADRFADWPVRVDVLSRFRSTKEVNEALKRLADGQIDVIVGTHKLLQPDIK
FKQLGLVIVDEEQRFGVRQKEQLKKLRAEVDLLTMTATPIPRTLNMAMSGLRDLSLITTP
PAHRMAVRTFISAWEPALMREAFQRELQRGGQVYFLHNEVESIERTTRELQELIPDARIG
IAHGQMPERELEQVMADFHRQRFNVLVCTTIIETGIDIPTANTIIINRADRFGLAQLHQL
RGRVGRSHHRAYAYLIVPDRKSITADAEKRLEALASLEELGAGFTLATHDLEIRGAGELL
GDEQSGQIQEIGFGLYTELLERAVRALKSGKIPDFDLSSEHETEVELHLPALIPDDYLPD
VHTRLTLYKRIASARNEESLRELQVEMIDRFGLLPDAVKQLFALASLKLMATPLGIRKLD
FGANGGRVTFRDKPDIDPMALIRLIQNYPRIYKLDGQDKLKVNLELPGASERIRVAEEIL
GKLGARKAA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgcctaatccgatcaaccacccgccccttcccaccactcccaagcaacgccgcttctgg
acgccaccacacggttcagcacgggccttgctggttgccgaagccgcgcaatcgcatagc
ggcctgctggtggtggtcacgaaggacacccaacgcgcgcacgcgctggaagacgaattg
cggatcttcgccggctcgctgccggtgctgcattttcccgattgggaaacactgccctac
gacgtcttcagtccgcacccggatatcgtgtcgcagcgcatcgccacgctgtaccaattg
cccagcgtaaagcgcggtgtgctggtggtgtcggcggcaacgctgatgcagcggattgct
ccgcgcacgcacatcaccggctccggcctgatgctgcgcaagggacagaagctggatctc
gctgcggaacagcgtcgactggaagcagccggctaccggcacgtaccgcaagtggccgag
ccaggcgatttcgcggtgcgcggcgcgctgatcgatatcttcccgatgggagcgcgcgaa
ccctatcgcatcgaactgttcgatgatgaagtggagtcgatccgcagcttcgatccggaa
acacagcgctcgcagcagcaagtcgaaaaggtggaattgctgcctgcccgcgaatttcct
gtgacggacgacgcagccaaagcgttccgcaatcgcctgcgcgagcgctttccaatcgat
gtgcgccgctgtccgatctaccaggacatgaaggaagccgttacaccgggtggcatcgag
tactacttgccgttgttcttcgagcagacggcaacactgttcgattacctcgccgacgac
gcgctgttcgtgctcggcgaaggcacgggcgaagctgccgaacagttctggacgcagact
gcagaacgctacgaccagcgcgcgcacgatatcgagcgcccggtattgccaccagccgag
ctttatctttcacccgaacagttgcgcgaacaatggaacaagcgcctgcgcgtggaagtg
gtcgacagtggccacgaacacgccgtggcttccggtacacaacccgcacccgaggtgccg
ctcaaccgcaagggcgaagagccgggcacctcgttgcgtcatttcatcgaaaactatccg
gggcgcgtattgatcgccgccgattcggccggtcgccgcgaagccctattggagcagctg
gccgccgcgggcttacgcccacagaacgtcgatggctggcaaggtttcctggctgatccg
aacaagctcaccatcaccatcgcgccgctcgaacaaggcttcgcgctgaccaaacccgcc
atggcggtgttgaccgagcgcgaactgttcggcgaacgcgtgcgcaccgagcgtcggcgc
cgccgcggcgcagcgcgcgatccggacaccatcattcgcgacctgaccgagctgtcgatc
ggctcgccgatcgtgcacgtcgatcacggcgtaggccgttaccagggcttggtgtcgatg
gagctgggcggcatggccggcgagttcctcactatcgaatatgccaagggtgacaagctg
tacgtgccagtggcgcagcttggcctggtcagtcgctactcgggtactgcgccggaactc
gcaccgctgcattcattgggtggcgatgcctgggaacgcgcgcgcaagaaagccgcggag
aaagtacgcgatgtggcggcggaattgctcgccatttatgcccagcgtgaagcgcgcggt
ggcgaatcattgccgatcgatcgtcagctggtcgaggaattcggcagcagcttcccgttt
gaggaaactccggatcagctgcatgccatcgatgccgtgcttggcgatttggctgcacca
cgcgcgatggatcgcgtgatctgcggcgacgtcggtttcggcaagaccgaggtcgcattg
cgtgcagccttcgctgctgccaccgccggcaaacaggttgccgtgctggtgccgaccacc
ctcctggcccagcagcattaccgcaattttgccgaccgcttcgccgattggccggtgcgt
gtcgacgtgctgtcgcgcttccgttcgaccaaggaagtaaacgaggcgctcaagcgcctc
gccgatggtcagatcgacgtgatcgtcggcacccacaagctgctgcagccggatatcaag
ttcaagcaactcggtctggtgatcgtcgatgaagaacaacgtttcggcgtgcgccagaag
gagcagctcaaaaagctgcgcgccgaagtcgatctgctgacgatgaccgccacgccgatt
ccgcgcaccctgaacatggcgatgagcggcttgcgcgatctgtcgctgatcaccacgcca
cccgcgcatcgcatggccgtgcgtacattcatttccgcatgggaaccggcccttatgcgc
gaagcattccagcgcgaattgcaacgcggcggccaggtgtacttcctgcacaacgaagtg
gagagcatcgagcgcaccacccgtgaattgcaggaattgattcccgatgcccgcatcggc
atcgcccatggccagatgccggaacgcgagttggaacaggtgatggccgatttccatcgc
cagcgtttcaacgtactggtgtgcacgacgatcatcgaaaccggcatcgacatccccacc
gccaacaccatcatcatcaatcgcgcggaccgctttggcctggcccagctgcatcagctg
cgtgggcgtgtcggccgttcgcatcatcgcgcttacgcatacctgatcgtaccggatcgc
aagagcatcacggctgacgcggagaagcgcctggaagccctcgcttcgctggaagaactg
ggcgcaggcttcacgctcgccacgcatgatctggagatccgcggtgccggtgaattgctg
ggcgatgagcaatccggccagattcaggaaatcggcttcggcctgtatacggaattgctc
gaacgcgccgtgcgcgcgctgaagtctggcaagattccagatttcgacctcagcagcgaa
cacgaaaccgaagtggaactgcaccttccggcactgattcccgacgactacctgcccgat
gtacacacccgtctgacgctatacaagcgcatcgccagcgcacgcaatgaagaatccttg
cgcgaactgcaagtggaaatgatcgaccgcttcggcctgctgccagatgccgtcaagcaa
ttgttcgcgttggcgagcttgaaactcatggcaacaccgctgggcatccgcaagctcgac
ttcggcgcgaacggtggacgcgtcaccttccgcgacaagcccgatatcgatccgatggca
ctcatccggctgatccaaaactatccgcgcatctacaagctggatggtcaggacaaatta
aaggtgaatttggaattgccgggtgccagcgaacgcatccgtgttgcggaagaaatcctg
ggcaagcttggggcgcgcaaggcagcttaa
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integrated database retrieval system
