Dendrobium catenatum: 110091890
Help
Entry
110091890 CDS
T05027
Name
(RefSeq) LOW QUALITY PROTEIN: poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
dct
Dendrobium catenatum
Pathway
dct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110091890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dct03019
]
110091890
Enzymes [BR:
dct01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
110091890
Messenger RNA biogenesis [BR:
dct03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110091890
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
110091890
NCBI-ProteinID:
XP_020671842
LinkDB
All DBs
Position
Unknown
AA seq
698 aa
AA seq
DB search
MALSGFRAFGSRAITQTITSAQYRHLHRFLSSAASTTTSGGSGVSVAVKKVTLSNFCSVL
DDLRIRIREADFVAIDLEMTGVTSAPWRDSFEFDRSDVRYLKVKDSAEKFAVVQFGLCTF
RWDACQGSFIAHPLNFYIFPRKVLSVEGPTDEFLCQTTSISFLAKYQFDFNACIHEGISY
LSKTQEEEALQNLCSAYENALLGFSSESEEYVEIPAVRTADVFFTERMKIRFHEWRENVL
KYPEDPILEGNDCGHNVDFQMVFFKMHPAIMLNGFTFHQLKLIQLVLRKYFKDLLYLCVS
GENCSSQKLVVYTDSEEDRASLMXTKLKMKGEVCFYTQMLNVFANFDGYYXXRRIATFHV
SFIIGPLPSSMEEFALSVNKILPHIIDTKHLISSNNFIQYLMKKKKKSLSSAFSLLCPQL
SSTSQNLASTRSFVKVDVQADELGSSSWNSGAKHEAGFDAFMTGCVFAQACSHLGIKFEQ
DSSIMDLARNDNLKSYINILYPSWNSGTVIDLRTGSESPVSSYKRKYLKIEYANIALIWG
FSSKLKPNDIEECLCKVFGTASLISVFFLDRTAALIQFNKMELVNDFLVLKDMLEKDDGP
VSVLHPLAKLLEGGNTRAADYDTYRDICSSSASTSKILFADQAEAIGIRWKTKIRPACKE
TSELDVLKDSVSEHQSNKNDSEKQSQHQFSFEEMLNSL
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggcgctttcagggtttagggctttcggcagccgcgccattacccaaaccataacctct
gcgcaatatcgccacctccaccgctttctatcctccgccgcctccactaccacttccggc
ggttctggcgtctcagtggcggtaaaaaaggtgactttgtccaacttttgttcggttctc
gatgacctgcgaatccgaatccgggaggcggatttcgttgccatcgatctggagatgacg
ggtgtaactagcgcgccgtggcgtgattcgttcgagtttgatcgctcggacgtgcggtat
ctcaaggtgaaggattccgccgagaagtttgctgttgtccagtttggtctttgcactttt
cggtgggatgcttgccagggctccttcatcgcccacccgcttaacttttatatatttcct
cgaaaagtgctgtcagttgaagggccaactgatgaatttctttgccagacaacttcaata
agttttctagctaaataccagtttgatttcaatgcttgcatacatgaaggaatctcttat
ttatctaaaacacaagaagaagaggctctacagaacctgtgctcggcttatgagaatgct
ttgcttggtttctcaagcgagtctgaagaatacgttgaaatacccgcagtgcggactgca
gatgttttttttacagaaaggatgaaaattagatttcatgaatggcgtgagaatgtgttg
aaatatccagaagatcctattttagaaggaaacgattgtggccacaatgtggactttcag
atggttttcttcaaaatgcacccagctataatgttgaatggattcaccttccaccagctt
aagctgattcaactggttttaagaaaatacttcaaggacctcctgtatttatgtgtaagt
ggtgaaaattgttcttcacagaagctagtagtttacacggattctgaggaggatagggca
tctcttatgngtacgaaattgaaaatgaaaggtgaagtttgtttttatactcaaatgctg
aacgtttttgccaattttgatggatattattagtaaagaagaattgcaactttccatgtt
tcttttattattggtcctcttccttcgtcgatggaggaatttgctttatcagtcaacaag
atacttccccacattatcgacaccaagcacctcataagttctaacaattttattcagtat
ttgatgaagaagaaaaagaaatcattgtcatctgccttctctcttttgtgcccacaacta
tcttccacatctcagaatttggcttctactcgttcatttgttaaagtcgatgttcaagct
gatgaactgggatcatcttcctggaattcaggtgcaaagcatgaagctggatttgatgct
tttatgaccggatgtgtctttgctcaagcttgcagtcatttaggtatcaaattcgagcag
gactcgtcgataatggatctggcaaggaatgataatctgaagagctacatcaatatcttg
taccctagttggaacagtggaacagtaatcgacttaagaacaggttcagagagcccagtt
tcatcttacaaacgcaaatatctaaaaatagaatatgcaaacattgcccttatctggggt
ttctcatctaagcttaaaccaaatgatattgaggaatgcttgtgcaaggtgtttggcaca
gcttctttgatctctgtgttttttcttgatagaactgcagctcttattcagtttaacaaa
atggagctggtgaatgattttttggtattgaaggacatgctggagaaagacgatgggccg
gtatcggttttgcatccccttgcaaagctattggaaggcggcaacactcgtgccgctgat
tacgatacttacagggacatttgtagctcatcggcgtcgacgtcgaagattttgtttgcg
gaccaggcagaagcaattgggatcagatggaagactaagattaggcctgcttgcaaggag
accagtgagttagatgtgcttaaagattcagtatcagaacatcaaagtaataaaaatgat
tcagagaagcaaagtcaacatcaattttcttttgaagaaatgctgaattctttataa
DBGET
integrated database retrieval system
