Dendrobium catenatum: 110091947
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Entry
110091947 CDS
T05027
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
dct
Dendrobium catenatum
Pathway
dct03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110091947
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dct03041
]
110091947
Enzymes [BR:
dct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110091947
Spliceosome [BR:
dct03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
110091947
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
AAA_30
nSTAND3
T2SSE
ResIII
SRP54
nSTAND_NTPase5
PhoH
Cas3-like_C_2
ABC_tran
NB-ARC
AAA_16
Hydrolase
NagA_C
Flavi_DEAD
AAA_23
Motif
Other DBs
NCBI-GeneID:
110091947
NCBI-ProteinID:
XP_020671918
LinkDB
All DBs
Position
Unknown
AA seq
768 aa
AA seq
DB search
MDDSDKIEEYRMPEAYDKEGGVNQEKRFAVAMQRYRDSGSSDKMNPFAEQEAWEEHQIGK
ASLRYGSKNKKLSSDDYQYVFEDGIDFIKASVLDGTQHEDEMAEEPNDSAAKTMLEKLQE
ERKSLPIYPYREELLKAINDHQILVIVGETGSGKTTQMPQYLHEAGYTKDGKMVGCTQPR
RVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLSEPDLASY
SVIMVDEAHERTISTDILFGLVKDIARFRKDLKLLISSATLDAEKFSDFFDSAPIFKIPG
RRYPVDIHYTTAPEADYIDAAIVTVLQIHVTQPPGDILVFLTGQEEIETIDEILKHRTRG
LGTKIAELIVCPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVVDPGF
CKIKSYNPRTGMESLLVNPISKASAMQRAGRSGRTGPGKCFRLYTAYNYENDLDENTVPE
IQRCNLANVVLSLKSLGIRSLVNFDFMDPPPSEAVIKALEQLYALNALNSHGELTKIGRM
MAEFPLDPMLSKMIVASDKYKCSEEIVSIAAMLSVGNSIFYRPKDKQVHADNARLNFHTG
NVGDHIALLNVYASWKETNFSTQWCYENYIQVRSMKRARDIRDQLEGLLEKVGIEIVSNP
SNLDAIKKAITSGFFYHAARLQKTGAYQTVKNPQTVHIHPSSGLAQELPPRWVIYHELVL
TTKEYMRQVTELKPDWLVEIAPHYYQLKDVEDSSSKKMPRGPGRAAMS
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atggatgattctgacaaaattgaggagtataggatgccagaagcatatgataaagaggga
ggtgtaaatcaggagaaaaggtttgctgtagccatgcaaagatacagggactctggttct
tctgataagatgaacccattcgctgaacaggaggcatgggaggaacatcaaattggtaaa
gcttctttaagatatggctcaaagaataaaaagctatcatcagatgattatcaatatgta
tttgaagatgggattgatttcattaaggcatcagttttagatggaactcagcatgaagat
gagatggccgaggaaccaaacgattcagcagcaaaaaccatgttagaaaagttgcaggaa
gaaagaaaatctctgccaatatatccttatcgagaggaacttctcaaggctattaatgac
caccagatacttgttattgtcggagaaactggctccggaaagactactcagatgccacaa
tatcttcatgaagctggttatacaaaggatgggaaaatggttggatgcacccaaccacgt
cgtgtggccgcaatgagtgttgccgcacgtgtgtcccaggaaatgggtgtcaaacttggt
catgaggttggctattctatcaggtttgaagattgtacatctgagaagactattctaaaa
tatatgacagatgggatgttgttgcgggaatttctcagtgaacctgatttagcaagttat
agcgttatcatggtcgatgaggcacatgaaaggacgatttcaactgatattttgtttggc
ttggttaaggatattgcacgcttccggaaggaccttaagttgctaatctctagtgcgaca
cttgatgctgagaagttcagtgatttttttgattcagctcccattttcaaaattccaggg
aggagatatcctgttgatatacattacacaactgctcctgaagccgattacattgatgct
gccattgtcactgttcttcaaatacatgtgacacaacctcctggtgatattcttgtattt
cttactggacaggaagaaattgaaactattgatgagattctgaagcatagaactaggggt
ttaggaactaaaattgcagaacttatagtatgcccaatctatgccaatcttccaacagag
cttcaggcaaaaatctttgaacctacaccggaaggggctcgcaaggtcgtattggcaact
aacattgctgaaacatccttaaccattgatggtattaaatatgttgttgatcctggattc
tgcaagataaaatcttataatccacgtactggtatggaatcattgcttgtaaatccaatc
tcaaaagcctctgcgatgcaaagggctggacgatctgggcgcacagggcctggaaaatgt
tttcgtctgtacactgcatataattatgaaaatgatcttgacgaaaatacagtacctgag
atacagaggtgcaatcttgcaaatgttgtgctttctcttaagagcttgggcattcgtagt
ttggtaaattttgattttatggatcctcctccttcagaggcagtgattaaggctcttgaa
caactttatgcacttaatgcactgaatagccatggagagttaaccaaaattgggaggatg
atggcagagtttccacttgatccaatgctttccaagatgattgttgcttcagataaatat
aagtgctctgaagagattgtatccattgctgcaatgctgtcggttgggaattcaatcttc
tatcgtcccaaggacaagcaagtccatgcagacaatgctaggctgaattttcatactggg
aatgttggtgaccatattgctttgctaaatgtgtacgcttcctggaaagaaacaaacttc
tcaacgcaatggtgttatgaaaactacatccaggtccgcagtatgaaacgagccagagat
atcagagaccagctagaaggtctcttggaaaaagttgggattgagattgtttcaaatcct
tccaatttagatgcaatcaagaaggctataacatcaggatttttttatcatgctgcaagg
ctccaaaagactggtgcgtaccaaactgttaaaaatccacaaacagttcacatacatcca
agctccggcctggcacaggaattacctcctcgctgggttatttaccatgaacttgtgctt
accaccaaagagtacatgcgacaggttactgagttgaagccagactggctagttgaaatt
gctccccactattaccagttgaaagatgttgaagattcttcatcaaagaagatgccacgt
gggcccgggagagcagcaatgagctaa
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