Dendrobium catenatum: 110091980
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Entry
110091980 CDS
T05027
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
dct
Dendrobium catenatum
Pathway
dct03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110091980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dct03041
]
110091980
Spliceosome [BR:
dct03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
110091980
Complex C
U5 SnRNP specific factors
110091980
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
110091980
NCBI-ProteinID:
XP_020671965
LinkDB
All DBs
Position
Unknown
AA seq
2360 aa
AA seq
DB search
MWNIGASSSPSVPMPAPPPPGTTVGGIMPPPPPPAVQPSYSIPPSPAEMEALLVEKARKW
DQLNSKRYGDKRKFGFVETQKEDMPPEHVRKIIRDHGDMTSKKFRHDKRVYLGALKFVPH
AVYKLLENMPMPWEQVRNVKILYHITGAITFVNEIPWVVEPIYLAQWGSMWIMMRREKRD
RRHFKRMRFPPFDDEEPPLDYADNLLDVDPLEAIQLELDEEEDSAVYTWFYDHKPLVKTK
LINGPSYRRWHLSLPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPK
FEPLYRDMEKGDEDWNEFNDINKLIIRQPLRTEYRIAFPHLYNNRPRKVKLCIYHTPMIM
YIKTEDPDLPAFYYDPLINPITSVNKVDRREKKVLDGEDEEDFFLPEGVEPLLQDTQLYT
DTTAAGISLLFAPRPFNTRSGRMRRAEDIPLVSEWYKEHCPPSYPVKVRVSYQKLLKCYV
LNELHHRPPKAQKKKHLFRSLQATKFFQSTELDWVEAGLQVCKQGYNMLNLLIHRKNLNY
LHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANVQFRLGNVDAFQLA
DGLQYTFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWR
VWLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLD
AMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAH
YNRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVH
WLESRKFSPIPFPPLSYKHDTKLLILALEKLKESYSVAVRLNQLQREELGLIEQAYDNPH
EALSRIKRHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHL
FPNWIKPADSEPPPLLVYKWCQGINNLQGIWDTSDGQCVVMLQTKFEKFFEKIDLTMLNR
LLRLVLDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGL
TRASEIAGPPQMPNEFITYSDTKIETRHPIRLYSRYIDKVHILFRFTHEEARDLIQRYLT
EHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFV
SVYSKDNPNLLFSMCGFEVRILPKIRMTQEAFSNTKDGVWNLQNEQTKERTAIAFLRVDD
EHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENK
IQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFR
SGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQSQNRRLTLEDLEDSWDR
GIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDV
IQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRF
TLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLC
QVLDQELDALEIDTVQKETIHPRKSYKMNSSCADILLFAAHKWPMSKPSLVAESKDVFDQ
KASQKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSA
FGNWFPGSKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSN
QIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLG
QLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQ
ACLKIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLL
KPDKTIITEPHHIWPALTDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGA
EITPPSQQRQQIAEIEKQAKEASQLTAVTTKTTNVHGDELIVTTTSPYEQAAFGSKTDWR
VRAISATNLYLRVNHIYVNSDDIKETGYTYIMPKNILKKFICIADLRTQIAGYLYGLSPQ
DNPQVKEIRCIVMPPQWGSHQHVNLPSALPEHEFLNDLEPLGWMHTQPNELPQLSPQDVT
SHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPTGYEWGRSNKDTGSNPHGYLPT
HYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTASMKYGTKLGAPRDYYHEDHRPTHF
LEFSNLEGEIAEVEREDAFS
NT seq
7083 nt
NT seq
+upstream
nt +downstream
nt
atgtggaatatcggggcgtcatcgtccccttcggttccgatgccggctcctccgccgccg
gggactactgtaggagggatcatgccaccacctccaccaccagcggttcagccctcctac
agcatacctccttctccggcagagatggaagcccttctggtggagaaggcgaggaagtgg
gatcaacttaactccaagaggtatggggataagaggaagttcggatttgtcgagacccag
aaggaggatatgcccccagagcacgttcgcaagatcatcagagaccatggtgacatgaca
tcaaaaaaattccggcatgataagcgggtctatcttggtgctctaaaatttgttccccat
gcagtgtataaacttttggagaacatgcctatgccctgggagcaggttcgtaatgtgaaa
atactctatcatatcactggtgccatcacatttgtcaatgagataccatgggtagttgag
ccgatctatttagcacagtggggctcaatgtggatcatgatgcgacgagaaaaaagagac
cgaaggcatttcaaaagaatgagatttcctccatttgatgatgaagagcctccattagat
tatgcagataacttgttggatgttgatccactggaggctattcaactggaattggatgaa
gaagaggattctgctgtatatacttggttctatgaccataaacctcttgtaaaaacaaag
cttattaatggtcctagttataggagatggcatctgtctcttccaataatggcaactctt
catcggttagcggggcagttgctttctgatttgattgatcggaattacttctacctgttt
gacatggaatcattcttcacagcaaaagcattgaatatgtgcatacctggtggtccaaaa
tttgaacctttgtatcgtgacatggaaaaaggcgatgaggattggaatgaattcaatgac
ataaataaattaattattcgtcaaccattgaggacagaatatagaatagctttccctcac
ctgtataacaataggcccagaaaagtgaagctttgtatttaccatacaccaatgataatg
tacataaaaacagaggatcctgatctacccgcattctactatgaccctttaataaaccct
ataacttctgtcaacaaagttgatcgacgagagaaaaaggtgcttgatggggaagatgag
gaagatttcttccttccagaaggtgtggaacctctgttgcaagacactcaactttataca
gatactacagctgcgggcatatcactgttgtttgcacctcgtccatttaacacaagatct
ggtcgcatgagacgtgctgaggatatacctcttgtatcagagtggtacaaggaacactgt
ccgccatcctatccagtaaaggttcgtgtgagttaccaaaagttgctaaaatgctacgta
ctgaatgagctacatcacagacctccaaaggcacagaagaagaaacacttgtttcggtct
cttcaagctaccaagttcttccaaagcacagagcttgattgggtagaggcagggctgcag
gtttgcaagcagggttataacatgttgaatctgctgattcatagaaaaaatctcaactat
cttcaccttgattacaatttcaatttgaagcccgtaaaaactcttactacgaaggagcgt
aaaaaatcacgatttggaaatgctttccatctttgtcgagaaattttgcgattgaccaaa
cttgtagtggatgccaatgttcaatttcggttgggaaatgtggatgcatttcagttggct
gatggtttgcagtacacattttcacatgttggccaattgactggtatgtaccgctacaag
taccgattgatgcggcagattagaatgtgcaaggatttgaagcatttgatttactatcgt
ttcaatactggtcctgttggaaaagggcctggctgtggattttgggcgccaatgtggaga
gtgtggttatttttcttacgtggtatagtgccattattagagaggtggctaggtaacttg
cttgcacgtcagtttgaaggtcgccattccaaaggagttgccaagacagtcactaaacag
cgtgtagagagccactttgacttggagctaagagctgctgtcatgcatgatgtcctggat
gcaatgcctgagggcattaagcagaacaaggctaggacaatcctacaacaccttagtgaa
gcatggcgttgttggaaagccaacatcccctggaaggtccctggacttccagttcccatt
gagaacatgatccttcgttatgtgaagtccaaagctgattggtggacaaatgttgctcac
tacaatcgtgaacgtattcgaagaggtgcgacagttgacaagactgtttgtcgcaagaat
ctgggaagattgacccgtttatggttaaaggctgaacaggaaagacaacacaattatctg
aaagatggcccttatgtaactcctgaagaagcagttgctatatacacaacgacagtgcat
tggctggaatctaggaagttttcgcctataccatttccgccactatcatataaacatgat
actaagctacttattctggctttggaaaagctaaaagaatcttacagtgtggcagtgaga
ttgaatcaacttcagagggaagaattgggtcttattgaacaagcctatgataatccacat
gaagcattatcaaggataaaacgtcacttgcttactcagcgtgcttttaaagaggttggc
attgagttcatggatctgtatagttatcttatccctgtctatgaaattgaacctcttgaa
aaaatcacggatgcttaccttgatcaatacttatggtatgaaggtgacaagcgacatctg
tttccaaactggattaagcctgccgactcagaaccacccccacttcttgtttacaaatgg
tgtcaaggtataaacaatctgcagggcatatgggacacaagtgatgggcaatgtgtggtc
atgcttcagaccaaatttgagaaattctttgagaagattgatttgaccatgttaaatagg
cttcttcgcctggtcctcgaccacaatattgcagattatgtcactgcgaagaacaatgta
gttttgtcttacaaggatatgagccatacaaactcctatggcctcatccgtggtttgcag
tttgcctcctttgttgtacaatattatggccttgtacttgacctcttgcttcttggtcta
actagagcaagtgaaattgctggtcctcctcagatgcccaatgagttcattacctactca
gatactaaaattgagacacggcatcccattcgtctatattcacggtatatagataaagtt
cacatattgttccgcttcactcatgaagaagcacgtgatcttattcagcgctatctaaca
gaacatccagatccaaacaatgaaaatatggtaggatataataataagaaatgttggcca
agagatgcaagaatgaggctcatgaaacatgatgtcaaccttgggagaagtgttttctgg
gatatgaagaatcgtttgcctcgaagcatcacaacattggagtgggaaaatagctttgtg
tctgtttacagcaaggacaatccaaacttgctcttcagcatgtgcggctttgaggttcgc
atcttgccgaagataagaatgactcaagaggcattcagtaacaccaaagatggagtttgg
aacctgcagaacgagcagaccaaggagaggacagcaattgcgtttctaagagttgatgac
gagcacatgaaggtgtttgagaatcgtgtgagacagatccttatgtcatccggatcaaca
acttttacaaagattgtgaacaaatggaacactgcccttattgggcttatgacatatttc
cgtgaagcaactgtgcatactcaggaactcttagatttgctggtcaagtgtgaaaataaa
atccagacacgtataaagattggattgaactcaaaaatgcccagcaggtttccgccagta
attttttatacaccaaaggagattgggggccttggcatgttatcaatgggacatatattg
atcccgcagagtgacctgaggtatagccagcaaacagatgtgggggtgactcatttccgg
agtggcatgagccatgaagaagatcagcttattcctaacctgtatcgctacatacagcct
tgggaaagtgagttcattgattcacaacgcgtatgggcggagtatgcattaaagaggcag
gaagctcagtcacaaaataggcgcctgacacttgaggatcttgaggactcttgggatagg
ggaatacctaggattaacacactcttccagaaagatcgtcataccttggcatatgacaaa
ggctggcgggttcgaactgattttaagcagtatcaagtcttgaagcagaatccattttgg
tggactcatcaaaggcatgatggcaaactgtggaatcttaataactacagaactgatgtt
atccaagcattgggaggagttgagggaatattggaacatacattatttaaaggcacatat
ttcccaacatgggaaggtctcttttgggagaaggcatcaggatttgaagagtctatgaag
tacaagaagttaacgaatgcgcaacggtctggcttaaatcaaattccaaaccggaggttt
acattgtggtggtctcctaccataaatcgagcaaatgtttatgtaggtttccaggtgcag
cttgacttaactgggatattcatgcatggaaagatcccaaccttgaagatatctttgatt
cagatatttcgtgctcatctttggcaaaaaattcacgagagtgttgttatggatctttgc
caagttttggatcaggagttggatgctttagaaattgatacagtgcagaaagaaacaata
catccgaggaagagttacaagatgaacagctcatgtgctgacatcctactgtttgctgca
cataaatggccaatgtctaagcctagcttagttgctgagtccaaggatgtcttcgatcaa
aaggcaagtcaaaaatattggatagatgtgcagcttcggtggggagattatgattcacat
gatatagagcggtatacaagggctaaatttatggattataccactgataacatgtcaata
tatccatcacctactggagtgatgataggacttgatttggcgtacaacttgcactcagct
tttggcaattggttccctgggtcaaagccattattggctcaagcgatgaataagattatg
aagtcaaatccggccttgtacgttttgagagaacggataaggaaaggtctgcagctttac
tcatctgaacctacggagccatacctttcatcacagaactatggtgaaatattcagcaac
cagattatatggtttgttgatgatacaaatgtgtatagggttactatccacaagactttt
gaaggaaatctcaccacgaagcccatcaatggtgcaatttttatattcaacccaagaaca
ggccagctgtttctcaaggttattcacaccagtgtgtgggctggccaaaagcgtcttggt
caactggcaaagtggaaaacggcagaggaagtggctgctcttgtgcgatccttacctgtt
gaagagcagccaaagcaaataattgtcacaaggaaggggatgttggatccgttggaggtc
cacttgcttgatttcccaaatattgtgatcaagggaagtgagctgcagttacccttccag
gcttgcttgaaaatcgagaagtttggtgacctgattctgaaggctactgaacctcaaatg
gttctcttcaatatctatgatgattggttgaagagcatttcttcatatactgccttctct
cgcttgattctcatacttcgtgcgcttcatgtcaacaatgaaaaggcaaagatgttactg
aagcctgacaagactatcattactgaaccacaccatatttggccagcactcactgatgac
caatggatgaaagtggaagtggctctaagggatctgattctctctgactatgctaagaag
aacaatgtgaacacctcagcactgacacagtctgaaatacgtgatattatactgggtgct
gagattactccgccatcacaacagagacagcagattgctgaaattgaaaaacaggccaag
gaagcaagccaattgactgcagtaacaaccaagacgacaaatgttcatggcgacgaactg
attgtaaccacaactagtccttacgaacaagctgcatttggatccaaaactgattggaga
gtgagggctatttcagctacaaatctttatctgcgtgtcaatcatatatatgttaactca
gatgacatcaaggaaacgggttacacatatatcatgcccaagaacattttgaagaaattt
atttgcatagctgatcttagaacccaaattgctggatatctgtatggtttaagtccccaa
gataatccacaagtgaaggaaatccgatgtattgtaatgccaccgcaatggggaagtcac
caacatgtaaatctcccatctgctcttcctgaacatgaattcttaaacgatcttgagcca
ttggggtggatgcatacacagcctaatgagcttccccagctatctcctcaggatgttaca
tctcatgcgcggattctggagaacaacaaacaatgggatggtgagaaatgcatcattctg
acctgcagcttcactccaggttcctgctctttgaccgcatacaagctaactccaactggt
tatgaatgggggcgttcaaataaggatactggaagcaacccacatggttacttacctacc
cactatgagaaggttcagatgctcctcagtgatcgtttcttaggcttctacatggttcct
gacaacggtccatggaactataacttcatgggcgtaaagcatacagcaagcatgaagtac
ggcactaagctcggcgcgcctcgggattattaccatgaggatcacaggcctactcatttc
ctcgagttcagtaatttagaaggagaaattgcagaggtagaaagagaggatgcgttctct
taa
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integrated database retrieval system
