Dendrobium catenatum: 110092194
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Entry
110092194 CDS
T05027
Name
(RefSeq) transcription elongation factor SPT6 homolog isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
dct
Dendrobium catenatum
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dct03021
]
110092194
03036 Chromosome and associated proteins [BR:
dct03036
]
110092194
Transcription machinery [BR:
dct03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
110092194
Chromosome and associated proteins [BR:
dct03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
110092194
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
SPT6_acidic
YqgF
HTH_44
Spt6_S1
HHH_9
Tex_central_region
SH2
Tex_N
Motif
Other DBs
NCBI-GeneID:
110092194
NCBI-ProteinID:
XP_020672293
LinkDB
All DBs
Position
Unknown
AA seq
1737 aa
AA seq
DB search
MGGRAVVSDDEDELEEVDDEGNMQGAGKGDIEERDEDDDEEDEEEGQDEYEKDGFIVDDV
EEEEEGEENNEDSDEERHRKKRKKKRESERTYVLDEDDYELLEDNNITVHRPKPGSKFKR
LKKAGRDSEAEERSGFSDDEESERADRGGRTAEEKLKRSLFGDDEGAPLEDIAEEEEQPE
EEEGDLIGDEDEMADFIVDEEDVDENGTIVRRPKVKKKKSKQAPGVSSSALQEAQEIFGD
VDELLMLRKQGMARDSSEWVEKRLEDEFEPFILSEKYMTPKDDAIRETDVPERIQLLEDL
TGPPPTDDKSIEEESAWIYNQLSSSFVSPLFGHDQLVKDIDKEDIGRVLTMVHVQKLDIP
FIAMYRKEFCRSLLKDSDDMIQNTEENSPIKWHKVLWAVHSLDRKWLLLQKRKSALEMYY
SKRFEEEARRIDDETRLALNRQIFSSISEALKEAKSEREADDVDAKFNLHFPPGEVDVEE
GQFKRPKRKSLYSICYKAGLWEVANKFGFNSEQFGLHLSLEKMRLEELQDGKEVPEEVAR
NFTCAMFEAAQDVLKGARHMAAVEIGCEPVVRKHVRSIFMENAVVSTSPTTDGNSTIDAY
HQLAGVKWLRDKPLSKFIDAQWLLIQKAEQEKLLQVTIKLPESVQSKLLVDASECYLSEC
VSKPAQLWNEQRKMILEDSFHNFILPSMEKEARSLLMARAKNWLLMEYGKQLWNKVSVGP
YQRKGNSVDIENEDEPELRVMTCCWGPGKPANTFVMLDSAGEVVDIIYAGSISIKSQGVA
EQQRKKGDQDRLLRFMTEHQPHVVCLGAANLSCRQLKDDIYEVIFKIVEDHPRDVSQDMN
ITIVWGDESLPRLFENARVSSDQLPGQPGIVKRAVALGRYLQNPLAMVATLCGPGKEILS
WKLCPLDDFLTPDEKYDMVEQIMVDATNQIGVDVNLASSHEWLFAPLQFVAGLGPRKASS
LQRAFVRSGSIFNRKEIPVGKIIRKKVFINAVGFLRVRRSGAAAATSHIIDLLDDTRIHP
ESYDLAKTMAKDVYSEDAPDDINDMDDDVLEMAIEHVREKSDMLKVLVIEEYAKSIAERF
GTDKKETLEDIKNELLHGFKDWRHPFTEPNPDEEFSMLSGESDDSLSEGRIVEVSVRYVQ
DSRVVCFFDSGLKGFIYAEDFSDEGFEPEKVKEGDILTCKIKSVVKSRCLVNLICKESEM
RKRHYIPQNLDPFYQEDDVTLHSEQEKARKEKELAKKRFKPRMISHPRFQNVTADEAMAF
LANKDSGESIIRPSSKGPSYLTLTLKISNGVYAHKDIIESGKDHKDITSLLRIGKTLTID
KDTFEDLDEVMDRYVDPLVTNLKNVLSYRKFRRGTKLEVDDQLRKEKAENPMRIVYSFGI
SHDHPGTFVLSYIRSSNPHHEYVGLYPKCFRFRKKDFEDLDRLVAYFQKNIDKPPLESGP
SIQTVAAKVPMKSPAWGYSSDGVFGGSTGSNDGWSSQTPDRERTSTPGSRGGRSDYRGRG
GRDGHPSGLPRPGRGRGRSYGRGNNFESGGRGSDYGNSKWGSNSDHGNSKWGSNSDHGNS
KWGSNSNDDHGNSKWGSNSNDDHDNSKWGSNSNDDDGLSSFPGAKVQDSPGKERFPGGWD
ATGRGGGGWGGSNNAAEDREDGGFGGRGWGNSRGDSAGGGWGGGDAGFGSNTGGGWGGNS
TGGGGGGRGGNSAGDGGDGRGADSSGWGSSKKLVPQGGGGGGWSGGGGGSRSGGGWD
NT seq
5214 nt
NT seq
+upstream
nt +downstream
nt
atgggcgggagagcagtagtctccgatgatgaagatgagttggaggaggtggatgacgaa
gggaacatgcaaggggcgggcaaaggtgatattgaggagagggatgaggatgatgatgag
gaagatgaagaagagggacaagatgagtacgagaaggatgggtttatagtggatgatgtg
gaggaagaagaagagggagaggagaacaacgaggacagtgatgaggagcggcacagaaaa
aagaggaagaaaaaaagagagtctgaaaggacttacgttcttgatgaggacgactatgag
ttgctagaggataataacatcactgtacatcggcctaaaccaggtagcaaattcaagcgc
ttgaaaaaggctgggcgggattcggaggcggaggagcgttccggtttctctgatgatgaa
gaatctgagagggcagatcgtggtggtagaactgccgaggagaaactcaagcgaagcttg
tttggtgatgacgaaggtgcacctcttgaagatattgctgaagaagaggagcaaccagaa
gaagaagagggggatttgattggcgatgaggatgagatggctgattttatcgttgacgag
gaagatgttgatgagaatggcaccattgtgaggcgacccaaggtgaagaaaaagaaatct
aaacaggcccctggcgtttcgtcatctgctttacaggaagctcaagagatatttggtgat
gttgatgagctattgatgctccgtaaacaagggatggcaagagattctagtgaatgggtg
gaaaagagactagaggatgagtttgagcccttcattctctcagagaagtatatgacgcca
aaggatgatgctataagagaaacagatgtacctgaaaggattcagctgttggaggacctt
acaggacctccacctacagatgacaagagcattgaagaggagagtgcctggatatacaac
caactcagcagttcctttgtttcacctctatttggtcatgatcagctagtaaaggatatt
gataaggaagatattggacgtgttttgactatggtgcatgttcaaaaattagatattcca
ttcattgctatgtaccgaaaggagttttgccgtagtctcttaaaagattctgatgatatg
attcaaaatacagaggaaaattctccaattaaatggcacaaggttctttgggcagtgcat
agtttggataggaagtggttacttcttcagaagcgcaagagtgctcttgaaatgtactac
tccaaacgttttgaggaggaagctcgtaggattgatgatgaaactagacttgcattaaat
agacaaatctttagctctatttctgaagctcttaaggaggcaaaatctgaaagagaggct
gatgatgtagatgcaaaattcaacctgcattttcccccaggtgaagttgatgtagaagaa
ggacaatttaaaaggccaaagagaaaatccttgtacagcatatgctacaaagctggtttg
tgggaggtcgctaacaaatttggctttaattctgaacaatttggattgcacctctcattg
gaaaagatgaggttggaagagttgcaagatggaaaagaagttccagaggaagtagctaga
aatttcacttgcgcaatgtttgaggcagctcaagatgtgctcaaaggtgccaggcatatg
gcagcagtagaaattggttgtgagcctgttgttagaaagcatgttcgtagtatttttatg
gaaaatgctgttgtctctacaagccctactactgatggaaactctacaattgatgcatat
catcaacttgctggtgttaagtggctaagggataaacctctgtctaagtttattgatgca
cagtggctgcttattcagaaagcagagcaagagaaacttcttcaggttacgataaaattg
ccagaatctgtacaaagcaagttacttgttgatgcgagtgagtgctatttaagtgaatgt
gtaagtaagccagctcaactttggaatgagcaacgcaaaatgatattagaggattccttt
cataatttcatacttccttcaatggaaaaggaagcacgatctctattgatggccagagct
aagaattggcttttgatggaatatggaaagcagttgtggaataaggtctctgtaggccct
tatcagagaaagggtaattctgttgacattgagaatgaagatgaaccggaattaagagtt
atgacctgctgttggggacctggaaagcctgctaatacttttgtaatgctggattcagct
ggagaagttgttgatattatttacgcaggttccattagcataaaatcccagggtgttgct
gagcagcaacgtaaaaagggtgatcaagaccggcttttaagatttatgactgaacaccag
cctcatgttgtatgcttaggagctgccaatctgtcatgcagacagcttaaggatgacatt
tatgaggtcattttcaaaatagtggaagatcatcctagagatgtcagccaagatatgaac
atcactatagtatggggtgatgaatctttacctcggttgtttgagaatgctagagtttct
tcagatcaactaccaggacagccaggcattgtaaagcgtgctgtggcgcttggtcggtac
cttcaaaatcctttggcaatggttgcaacactttgtggacccggcaaagaaatattgtct
tggaagctttgccctttggatgatttccttacccctgacgagaagtatgacatggttgag
cagataatggttgatgcaaccaaccaaataggtgttgatgttaatttagcttctagtcat
gaatggctctttgctcccttgcaatttgttgcaggtcttgggccacgaaaagcttcttct
ttacagagggcctttgtaaggtctggttctattttcaatcggaaagaaattccagtggga
aagatcatcaggaaaaaggttttcattaatgctgtcggctttctgagagttcgccgaagt
ggggcagcagcagctactagtcatatcattgatttgcttgatgatacaagaattcatcca
gaatcgtatgatttggcaaaaaccatggccaaggacgtctattctgaggatgctccggat
gatatcaatgacatggatgacgatgttctagaaatggcgattgagcatgtaagggaaaaa
tcagacatgcttaaagttcttgtaattgaagaatatgcaaagagcattgctgagcgtttt
gggactgataagaaggaaactctggaagatataaagaatgaactacttcatgggtttaaa
gactggcggcatccatttactgaacctaatccagatgaggagtttagtatgctatctggt
gaaagtgatgattcactctctgaagggagaattgttgaagtgagtgtacgctatgtgcag
gattctcgtgttgtttgcttttttgattctggtctcaaaggttttatctatgcagaagac
ttttcagatgaaggctttgagcctgaaaaggtgaaagaaggtgatatactaacatgcaaa
atcaagagtgttgttaaaagtaggtgtttagttaatttaatctgtaaagaaagtgaaatg
aggaaaaggcattatattcctcagaacctagatcctttctatcaagaagatgatgttact
ttacatagcgagcaggagaaggctcgcaaggaaaaggaacttgctaagaagcgattcaag
ccaagaatgatcagccatcctcggtttcaaaatgtcactgctgatgaagcaatggcgttc
cttgctaacaaggattctggagagagcataattcgaccaagttcaaaagggccatcatat
ttgactttgacactgaaaatttcaaatggtgtttatgctcacaaagacatcattgaaagt
ggaaaagatcacaaagatattacaagcttgcttcgcattgggaaaacattgactattgac
aaagatacttttgaggatcttgatgaggttatggatagatacgttgatccactagtaact
aatttgaaaaatgtgcttagttaccgaaaattccgacggggaacaaaattggaagttgat
gatcagttgaggaaagaaaaggcagaaaatccaatgagaatagtttatagttttggcata
tcccatgaccatccaggaacttttgttttgtcctatattagaagctcaaatccacatcat
gagtacgttgggttgtatcccaagtgtttcaggtttaggaagaaggattttgaggatctt
gataggttagtggcatattttcagaagaatattgacaagccaccgctggaatctggaccg
tcaatacagactgttgctgccaaggttccaatgaaaagcccagcttggggttactctagc
gatggtgtatttggtggttccacaggcagcaatgatggatggagtagtcaaactccagac
cgggagaggacatctacgccaggttctagaggaggaagatctgactataggggccgtggt
ggccgagatggccatcctagtggactgccaaggccaggccgaggtcgaggtcgaagctat
ggaagaggaaacaattttgagagtggaggccgaggttcagattatggtaattccaagtgg
ggttcgaattctgatcatggcaattccaaatggggttcgaattccgatcatggcaattcc
aaatggggctcaaattcaaatgatgatcatggcaattccaaatggggctcaaattctaat
gatgatcatgacaattccaagtggggctcaaattctaatgatgatgatggcttaagcagc
ttccctggagctaaggtccaagactcacctggcaaggaaagattccccggtggttgggac
gccactggtagaggtggtggaggttgggggggcagcaacaatgctgcggaagacagagag
gatggtggctttggcggtcgaggttggggcaattctcgtggtgactcagctggtggtggt
tggggaggaggagatgctggttttggcagcaatacgggtggtggctggggtgggaactct
accggcggtggtggcggtggtcggggtgggaattctgcaggcgatggtggtgacggtcgg
ggtgcagatagctcaggttggggaagttcgaagaaactggttcctcaaggtggtggtggt
ggtgggtggtctggaggcggaggtggaagtagatcaggtggtggttgggactaa
DBGET
integrated database retrieval system
