Dendrobium catenatum: 110092615
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Entry
110092615 CDS
T05027
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD isoform X1
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
dct
Dendrobium catenatum
Pathway
dct03022
Basal transcription factors
dct03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110092615
09124 Replication and repair
03420 Nucleotide excision repair
110092615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dct03021
]
110092615
03036 Chromosome and associated proteins [BR:
dct03036
]
110092615
03400 DNA repair and recombination proteins [BR:
dct03400
]
110092615
Enzymes [BR:
dct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
110092615
Transcription machinery [BR:
dct03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
110092615
Chromosome and associated proteins [BR:
dct03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
110092615
DNA repair and recombination proteins [BR:
dct03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
110092615
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
ResIII
DEAD
NAMPT_N
Motif
Other DBs
NCBI-GeneID:
110092615
NCBI-ProteinID:
XP_028548309
LinkDB
All DBs
Position
Unknown
AA seq
747 aa
AA seq
DB search
MKFHIEEVAVYFPYDHIYPEQYEYMVELKRALDARGHCLLEMPTGTGKTIALLSLITSYA
LAHPSSPLKLVYCTRTVHEMEKTLAELRVLYSYLPPSSSLLALGLSSRKNLCINPDVLSA
SSRDSIDSSCRRLTASWVRALAADREQSSRGESLQPSGAIPTCPFFESYDKASRDAILLP
SGVYTLEDLRAFGRDRKWCPYFLARNMIQYANIVVYSYQYLLDPKVANIISKEMQRECVV
VFDEAHNIDNVCIEALSVSIRRQTLDGATRNLNRIAQVIDKFKATDAGRLREEYNRLVEG
LAQRGNLPMTDTWLANPALPDDILKEAVPGNIRRAEHFLAVLRRLVQYLKGRLQVESVET
EVPVAFVASINAQAGIDQKMLKFCYDRLYSLMLTLEITETDEFLHIQTVCDFATLVGTYT
RGFSIIIEPFDERMPHIPDPILQLSCHDASLAIKPVFDRFQSVIITSGTLSPIDLYPRLL
NFNPVISRSFTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMVAAV
PDGIVCFFVSYSYMDGIVNSWNEMGILQDIMQHKLVFIETQDVVETTLALDNYRRACDCG
RGAVFFSIARGKVAEGIDFDKHYGRLVIMFGVPFQYTLSRILIARLEYLRDTFQIKEGDF
LTFDALRQAAQCVGRVIRSKADYGMMIFADKRYYPVCTIFLTKFCIVLPISNILMKNVPT
IISTHQSMSKDIINFDPSMGCLLSFML
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgaagttccatattgaagaggttgcagtatatttcccttacgatcacatctaccctgag
cagtatgagtacatggttgagctaaaacgtgctttggatgctcgaggccattgcttgttg
gagatgccaacaggcacaggaaaaactattgccctcctatcgctcattacttcatatgct
cttgcacacccttcctctccccttaagcttgtctactgtactcggacagttcatgagatg
gaaaagactcttgctgagctacgagttttgtactcctacctacccccttcttcatctctc
cttgctctcggattgtcctctcgtaagaatctttgtataaaccctgatgtcctctcagct
tcctctcgggactctattgattcatcatgtcgtcgcctcactgctagttgggttcgtgcg
cttgctgctgatagggagcaatctagtaggggagagtcattgcagccctcaggtgctatc
cctacttgccccttttttgagtcttatgacaaggcctctcgtgatgctattctacttccc
tcaggagtttacactcttgaggacctccgtgcatttggtcgtgatcgtaaatggtgccct
tacttccttgctcgcaacatgatccaatatgccaatattgttgtgtatagttatcaatac
ttgcttgatcctaaggttgccaacatcatctccaaagaaatgcaaagggagtgtgttgtt
gtttttgatgaggctcacaacattgacaatgtctgcattgaggctcttagtgtaagcatt
cgaagacaaactcttgatggggccactaggaacctcaaccgcattgctcaagtgattgac
aagttcaaggccacggatgctggtcggttgcgggaagagtacaacaggctggttgaaggt
ttggcacaaagaggaaacctacctatgactgatacttggcttgcaaatcctgccttgcct
gatgatattttaaaggaggccgtgcctggaaatattcgaagagcagagcattttttagct
gtcttaagaaggctggtgcaatatttgaagggtcgtttgcaagttgagagcgtggagaca
gaagtacctgtcgcttttgttgcttcaataaatgcacaagctggaattgatcagaaaatg
ctgaaattctgctatgacaggctgtattcgctaatgcttactcttgaaattactgagaca
gatgagtttctacacattcaaactgtttgtgattttgcaactttggttggtacatataca
aggggtttttctataattattgaaccttttgatgagagaatgcctcacataccagaccct
atcttacagcttagttgtcatgacgcatcacttgccataaagcctgtatttgatcgtttc
cagtcagttataattacatctggaactttaagccctattgatctctatcctcgacttttg
aattttaatcctgtcataagtcggagttttacaatgtccttgacccgtgattgtatatgt
ccgatggttctaacacgagggagtgaccagttaccagtgagtacgaaatttgatatgcgc
agtgatcctggtgttgtgaggaactacggacggctcttattggaaatggttgctgccgtc
ccagatggcattgtctgtttctttgttagttactcctatatggatggcattgtgaacagt
tggaacgaaatgggcattttacaggatatcatgcagcataagcttgtatttattgaaact
caggatgtagtggagactactttagctcttgataactaccgaagggcatgtgattgtggt
agaggtgctgttttcttttctatagccaggggtaaagtggccgaaggcattgattttgat
aaacattatggtagacttgtgatcatgtttggtgtccctttccaatatactcttagcaga
atcctgattgctcggttagagtatttgcgtgacacatttcaaataaaggagggtgatttc
ctgacattcgatgctttgaggcaagccgctcaatgtgttggccgtgtaattcgctcaaaa
gcagactatggaatgatgatatttgctgataaaaggtactatcctgtatgtactattttc
ctaactaagttttgcatcgtattaccaatttctaatatcctgatgaagaatgttccaact
attatttcaacccatcagtcaatgtcaaaagatattataaattttgaccctagcatgggg
tgtttgttatcatttatgctatag
DBGET
integrated database retrieval system
