Dendrobium catenatum: 110093016
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Entry
110093016 CDS
T05027
Name
(RefSeq) CCR4-NOT transcription complex subunit 3
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
dct
Dendrobium catenatum
Pathway
dct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110093016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dct03019
]
110093016
Messenger RNA biogenesis [BR:
dct03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110093016
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110093016
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
BAR_4
TMA17_helical
DUF4407
Motif
Other DBs
NCBI-GeneID:
110093016
NCBI-ProteinID:
XP_020673417
LinkDB
All DBs
Position
Unknown
AA seq
870 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTENANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKLIEREMERFKVCEKETKTKAFSKEGLGQQPK
TDPREKAKAETRDWLNNVVGDLESQIDNFEAEIEGLSVKKGKARPPRLAHLETSIARHKA
HIMKLELILRLLDNDELSPEQVNDVRDFIEDYVERNQEDPDEFSDVDELYSSLPLDKVES
LEELVSHGPSSLVKGVGSVSTIKNSINSAQDQSEETASQDANADSTPRTPPSKIVALGSP
PTAAPSAVALGASAGSNSAATSNASVRPSVGPTATSIFSGPVRGASDSLSATTPPLVNSS
VLVKEDDIISFPGRRSPAIPEIALGRGLNRVPSNQASTSTPISLSSVGISSPGALSSVSA
ASDMSKRTILSVDERIPSAALAQPLVSPLSSKMLLQQVSQANDGTVPIDSINLAESPIVG
GRVFSPSTVSGGQWRPQSATSFQNQNEMAQLRGRPEIAPDQREKYLQRLQQVQQQGHGTL
LGVPHLTGANTKQFPMQQQSPLLQQVGIGLNVQPPGLVAATSVQQQLQAPMHKQSHHILP
LTGAKETDMGSAKVDELQQQTLLDDLNVEPAVSIGLDKGINDDDLKSTYAVSSSASIVDA
SQLPRGTDLSPGQVLQSSQSSASLGVIGRRSVSELGAIGDNLSGLAVNSGGLHDQNYNLQ
MLEAALRKLPQPKDSQRIKNYTPRHPTVTPASYPQTRADIFENPAFWERLGMDQSGTDTL
FFAFYYQQNTYQQYLAARELKRQSWRYHRKYNTWFQRHEEPKVTTDEFEKGTYVYFDFHI
TDDNQQHGWCQRIKTEFTFEYNYLEDDLVL
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgggagcgagccgaaagcttcagggtgagatcgatcgggtcctgaagaaggtccaggag
ggtgtcgatgtctttgacagcatctggaacaaggtgtacgacactgagaatgcgaaccag
aaggagaaatttgaggcggatttgaagaaggagataaaaaagctccagcgataccgagat
cagatcaagacctggatacagtccagtgagataaaggataagaaggttagtgcctcttat
gagcaggctctgatggatgctcgaaagcttattgagcgtgaaatggaaagatttaaggtc
tgtgagaaggaaaccaaaacaaaagccttctctaaggagggtctaggtcaacaaccaaaa
actgatcccagagagaaggccaaagcagaaacacgggattggctgaacaatgtggttggg
gatttggagagtcaaattgataactttgaagctgagatagagggactgtctgttaagaag
ggaaaggctaggcctcctcggctggcacatttggagacatccattgctaggcataaggct
catataatgaagttggagttaattttgaggctactcgataatgatgagctaagtcctgag
caggtaaatgatgttagagattttatagaagactatgtggagcgtaatcaggaggatcct
gatgagtttagtgatgttgatgaactttatagctctttacctttagacaaggtggaatcc
cttgaagaacttgtttcacatggtccctctagtcttgtaaagggcgttggctctgtttct
acaattaagaattccattaattctgctcaagaccaaagtgaagaaacagcttctcaggac
gctaatgctgacagcactccgagaactccgccatcaaaaatcgtagccctagggtctcct
ccaacagcagctccatctgctgtagctctgggggcatcagctggatccaattctgctgct
acttctaatgcttctgtgcgtccatcagttggtccaactgcaacatcaatattttctggt
cctgttcgcggtgcatctgacagtttatctgccactacccccccacttgtaaactcatct
gttttagttaaggaagatgatatcatctccttccctggaaggaggtctcctgctatccct
gagattgcgctaggaagaggcctaaatagagtaccatcgaatcaagcatccactagtact
cccataagtttaagctctgttggcatttctagccctggagctctcagttcagtctctgca
gcatccgacatgagcaagagaaccattctgagtgttgatgaaagaattcctagtgctgct
cttgctcagccattggtttctcctttaagtagtaaaatgctactacagcaggtttcacaa
gctaatgatgggactgtcccgattgattcaattaatttggctgaaagtcctattgttggt
ggaagagttttttcaccatctactgtcagtggaggccaatggaggcctcaaagtgcaact
tcctttcagaatcaaaatgaaatggcacaattacgtggtagacctgagattgctccagac
cagagggagaagtatctgcaacgtctccaacaagtgcagcaacaaggccatggtaccctt
cttggtgtccctcatttaactggagctaataccaaacaattccctatgcaacaacagagt
ccccttttacaacaggtcggaatagggcttaatgttcagccaccaggtttagttgctgct
acatctgttcaacaacagctgcaggctcccatgcataaacaatcacatcatatattgcca
ttaaccggagcaaaagaaactgatatgggcagcgctaaagtagacgagctgcaacagcag
actctgctggacgatttgaatgtggagcctgctgtgagtattggtcttgacaagggtatc
aatgatgatgatttgaagtcaacatatgcggtctcaagttctgcatctatagttgatgct
agtcaattacccagaggtacagatctctctccaggacaagtattgcaatcaagccagtct
tcagccagtcttggtgtcattggaagaagaagcgtttcagaacttggtgctatcggtgat
aaccttagtggtttagctgtgaattctggtggcctgcacgatcagaactataatttgcag
atgcttgaggcagctcttcgcaagcttcctcaacccaaggattcacaacgaatcaagaat
tatacgccgaggcatcccaccgtgactcctgctagctatcctcagactcgtgctgacatt
tttgaaaatccagccttttgggagaggctgggtatggaccaatctggcactgatacgtta
ttctttgcattttactatcaacagaacacctaccaacaatacttagcagcgagagaattg
aagcgacagtcctggaggtaccataggaaatataacacatggtttcagcgacatgaggag
cctaaagttacgacagatgaatttgagaaaggaacatatgtgtattttgactttcatatt
acagatgataatcaacagcatggatggtgccagcggattaaaactgagtttacatttgaa
tacaattaccttgaagatgaccttgtgttatag
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