Dendrobium catenatum: 110093633
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Entry
110093633 CDS
T05027
Name
(RefSeq) DNA mismatch repair protein MSH2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
dct
Dendrobium catenatum
Pathway
dct03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
110093633
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dct03400
]
110093633
DNA repair and recombination proteins [BR:
dct03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
110093633
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
PAXNEB
Motif
Other DBs
NCBI-GeneID:
110093633
NCBI-ProteinID:
XP_020674237
LinkDB
All DBs
Position
Unknown
AA seq
947 aa
AA seq
DB search
MDEEHSPDNNGKLLPDLKLDARQAQGFISFFKTLPNDARAVRFFDRKDYYTVHGENASFI
AKTYYRTTTALRQLGNANDGISSVSVSRNMFENIARDLLLDRTDHTIEVYEGSGSNWRLT
KAGTPGNIGSFEDVLFANNDMQDAPVTIALFPSLRENQCTVGLSYVDLTNQKLGLAEFLD
DSQFTNVESVLVALGCKECLLPMESGKSIEFKNLHDVLSRCGVLLTERKKTEFKSRDLVQ
DLSRIIRGSIEPVRELLSEFQLALSALGALLSYVDLLADDCNYGNYTIQKYSLDRYMRLD
SAAIRALNILESKTDANKNFSLLGLMNRTCTAGMGKRLLNRWLKQPLLDVDEVNFRLDMV
QTFVDDVELRQTLRQQLKRMPDIERLTHNLRKRAANLSPVIKLYQACNRLPYIKSALEHY
EGQFSPLIRKKYICPLQHWLGKDQLNMFIDLVDTAVDVNHIESGEYMISPGYDEALALLK
DKLDAVEQQIYNLHKETANDLDLSIDKFLKLEKGSQFGHVFRITKKEEQKVRKTLNTHFI
VLETRKDGVKFTNTKLKKLGDQYQKILNEYTSRQKDLVLRVVDTSATFSMIFEDSARLLS
ELDVLLSFADLTVSSPVPYVRPEITGSDEGDIILEGCRHPCVEAQDGVNFIPNDCNLVRG
KSWLQIITGPNMGGKSTFIRQVGVNVLMAQIGCFVPCERASVSVRDCIFARVGAGDCQLR
GVSTFMQEMLETASILKGATEKSLIIIDELGRGTSTYDGFGLAWAICEYLVQVTRAPTLF
ATHFHELTALSHGTFDDSSGMAAVGVANYHVGAHIDPSSRKLTMLYKVEPGACDQSFGIH
VAEFANFPESVVALAKRKAAELENSAQTPTTSDKFNGEPGAKRIQVCNPDEMTTGAARAR
RFLEEFAKMPLDQMDVEQAMQNVSRLASELEKDAAKNAWLKQLFLTS
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagagcactcacctgataacaacggcaagttgttacccgatctcaaactagat
gctaggcaagcccaggggtttatttccttcttcaaaaccctaccgaatgatgctagggct
gtgcgcttctttgatcgcaaggattattatactgtccatggtgaaaatgccagcttcatc
gcaaagacatattaccgcaccaccactgcccttagacaacttggtaatgctaatgatggt
atttccagcgtcagtgtgagcagaaatatgtttgaaaacattgctcgcgatcttttactt
gatagaacagatcatacaatcgaagtctatgagggcagtggatctaactggaggttgact
aaagctggcactcctggtaatattggttcttttgaagatgtcctgtttgccaacaatgat
atgcaggatgctccggtcacaattgctttgtttcctagcttacgtgaaaatcagtgcact
gttggcctaagttatgttgatttgactaatcaaaagcttggtttagcagaatttcttgat
gacagtcaattcacaaacgtagaatcagttttagttgctcttggatgcaaagagtgtctt
ctccccatggaaagtggaaagtcgatagaattcaagaatctacatgatgtactgagtaga
tgtggtgttcttctgactgagcggaagaaaactgagttcaagtcacgagatctagtccag
gacctcagcagaataataagaggctcaatagaaccagtgcgagaactactttctgaattc
caactcgctttgagtgcacttggggcattactttcttacgtggatcttcttgcagatgac
tgcaactatggtaattataccatccaaaagtacagtctagatagatacatgcgattagat
tctgccgccattagggctttgaatattctagaaagcaaaacagatgcaaataaaaatttt
agtttgcttggtctgatgaatagaacgtgtactgctggaatgggcaagagattactaaac
aggtggctcaaacaacctcttcttgacgtggatgaagtcaattttagattggatatggtt
cagacatttgtggatgatgtagagttacgccaaacattgaggcaacaattgaagaggatg
ccagatattgagcgcttgacgcataaccttaggaagagagcagctaacttgtcaccagtc
attaaactataccaggcatgcaacaggttaccatacattaaaagtgcccttgagcattat
gaaggacagttttctcctttgataagaaagaaatatatctgtcctctacaacattggttg
ggtaaggatcagctgaatatgtttattgatcttgttgatacagctgttgatgttaatcac
attgagagtggtgaatatatgatatcacctgggtatgatgaagcattagcattattgaaa
gataagcttgatgcagttgagcaacaaatatacaacctgcacaaagaaacagccaatgat
cttgatctttctattgacaagtttttaaagttggaaaaagggagtcaatttggacatgta
tttaggatcaccaagaaagaagaacagaaagtgaggaaaactttaaatacccactttatt
gtccttgaaactcgtaaggatggagttaaatttacaaatacaaaacttaaaaaacttgga
gatcagtatcaaaagatactcaatgagtatacaagtcggcaaaaagatttagttttacgc
gttgttgacacttctgctaccttttcaatgatttttgaagattcagctaggcttctttct
gagctagatgtgttgctcagtttcgctgatcttactgttagctcccctgttccatatgtg
agaccggagatcacaggatctgatgaaggagatatcatattagaaggctgcagacatcct
tgtgtagaggcgcaggatggtgtgaattttatacctaatgattgcaatcttgttcgaggt
aagagttggttgcagattattactggtcctaatatgggaggaaaatctacatttatacga
caggttggcgtgaatgtgttgatggcacaaattggatgctttgttccatgtgagagggca
agcgtaagcgttcgtgattgtatctttgctcgtgttggtgctggtgattgccaactccgt
ggtgtttcaaccttcatgcaagaaatgcttgaaactgcctctatcttgaaaggcgcaaca
gagaagtcactcataataattgatgagttgggccgtggcacatctacttatgatggattt
ggtttagcatgggctatatgtgagtaccttgtgcaggttactagagctccaaccttgttt
gctactcacttccacgaactgactgcattgtcccatggaacatttgatgattcaagtggt
atggcagccgttggagtggcaaattatcatgttggggcacacatagatccgtcaagtcgt
aaattaactatgctttataaggtagaacctggtgcctgtgatcaaagctttggcatccat
gttgctgaatttgctaacttccccgagagtgttgtggctcttgccaaaaggaaggctgct
gagctggaaaattccgctcaaacaccaactacttctgataaatttaatggagagcctgga
gctaaacggatacaagtatgcaatcctgatgagatgactacaggtgcagctcgagctcgt
cggttcctcgaggaatttgccaaaatgccactggaccaaatggatgtggagcaagccatg
cagaatgtgagcagactcgcaagcgagctggaaaaagatgctgctaagaatgcatggctc
aagcagctctttctgacctcatga
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