KEGG   Dendrobium catenatum: 110093745
Entry
110093745         CDS       T05027                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
dct  Dendrobium catenatum
Pathway
dct03030  DNA replication
dct03410  Base excision repair
dct03420  Nucleotide excision repair
dct03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:dct00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    110093745
   03410 Base excision repair
    110093745
   03420 Nucleotide excision repair
    110093745
   03430 Mismatch repair
    110093745
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dct03032]
    110093745
   03036 Chromosome and associated proteins [BR:dct03036]
    110093745
   03400 DNA repair and recombination proteins [BR:dct03400]
    110093745
DNA replication proteins [BR:dct03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    110093745
  DNA Replication Termination Factors
   ELG1-RFC complex
    110093745
Chromosome and associated proteins [BR:dct03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    110093745
DNA repair and recombination proteins [BR:dct03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     110093745
  Check point factors
   HRAD17(Rad24)-RFC complex
    110093745
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_22 Rad17 RuvB_N Mg_chelatase AAA_16 AAA_11 AAA_5 ResIII AAA_24 AAA_14 AAA_assoc_2 AAA_2 nSTAND3 SLFN-g3_helicase PhoH AAA_28 AAA_19 T2SSE AAA_25 AAA_7 AAA_30 RNA_helicase IstB_IS21 Parvo_NS1 MCM DNAX_ATPase_lid DUF815 NPHP3_N DNA_pol3_gamma3 AAA_18 TIP49 bpMoxR NB-ARC
Other DBs
NCBI-GeneID: 110093745
NCBI-ProteinID: XP_020674382
LinkDB
Position
Unknown
AA seq 341 aa
MANLIPSSQPWVEKYRPKQVKDVAHQEEVVRVLANTLETANCPHMLFYGPPGTGKTTTAL
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGNRQGGYVCPPYKIII
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEDVMS
SRIMHICNEEGLSLDYEALTTLSSICEGDLRRAITYLQSAARLYGFSISSKELISVSGVI
PQGTVQALFAACKTGEFDTANKEVSNVISEGYPVSQMLSRLFELIVSSDDISDVQKARIC
KRLAEADKFLVDGADEYLQLMDVASHLMRALFDMPQEMQFD
NT seq 1026 nt   +upstreamnt  +downstreamnt
atggcaaatctgattcccagttctcagccatgggtggaaaaataccggccgaagcaagtg
aaggacgtagcccaccaggaagaggttgttcgcgttcttgccaacaccctcgagaccgcc
aactgtcctcatatgctcttctatggacctcctgggacgggtaaaaccacaacggctcta
gccattgcacaccagctatttggacctgaactgtacaaatcacgagttcttgaactgaat
gcaagtgatgatcgtgggatcaatgttgtgcggacaaaaataaaggattttgctgctgtt
gccgtgggttctggtaatcgccaaggtggctatgtttgtccaccttataaaatcattatc
ttagatgaagcagattcaatgactgaagatgctcagaatgctttgagacgtactatggag
acttattcaaaagtcacaaggtttttcttcatttgtaattacattagcaggataatcgaa
ccactagcttcaagatgtgcaaaattcagattcaaacctttaaccgaagatgtcatgagt
agtcgtatcatgcacatatgtaatgaggaaggcctcagtctagattatgaggctcttaca
acattgagctccatttgtgaaggagatcttcgtcgtgccataacatatttgcagagtgct
gctcgcttgtatgggttttcaatttcatccaaggaattaatcagcgtttctggggtgata
cctcagggtactgttcaggccctatttgcagcttgtaagactggggagttcgacacagca
aacaaggaagttagtaatgtgatttcagagggatatccagtatcacaaatgctatctcgg
ttgtttgaactgattgttagctcagatgacatatctgatgtacagaaggcacgaatatgc
aaaaggctggctgaagcagataagtttctagttgatggggctgatgagtacctgcagctg
atggatgtagccagtcatttaatgcgtgccctttttgacatgccccaggagatgcagttt
gattag

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