Dendrobium catenatum: 110095453
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Entry
110095453 CDS
T05027
Name
(RefSeq) splicing factor 3B subunit 3 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
dct
Dendrobium catenatum
Pathway
dct03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110095453
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dct03021
]
110095453
03041 Spliceosome [BR:
dct03041
]
110095453
03036 Chromosome and associated proteins [BR:
dct03036
]
110095453
Transcription machinery [BR:
dct03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
110095453
Spliceosome [BR:
dct03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
110095453
Complex B
110095453
Complex C
U2 SnRNP specific factors
110095453
Chromosome and associated proteins [BR:
dct03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
110095453
TFTC complex
110095453
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
110095453
NCBI-ProteinID:
XP_020676654
LinkDB
All DBs
Position
Unknown
AA seq
1363 aa
AA seq
DB search
MSEGEKDSGSVSPQQSAPRPGGYYLAKYLLRGSAVIHAVRGHLRSPTSDDIVFGKETSLE
LVVIDEDGIVQSICEQPVFGIIKDLAILGWNDKFRQSRPQMIGKDQLVVLSDSGKLSFLA
FSFEMHRFLAMNHIQLSKPGNSIDQVGRMLAVDPDGCFIAASAFEDQFALFSMSTSVGDN
MIDEKMFYPPEYKGETSLIKDAMRTNVRGTIWSMCFVSHGTDCSSTGYYPILATIMHRKA
RLRNELLLFGCNIRTRAIQFISSYPEAEIGPLALNISAVPHLSGFAVVFRIGDALLMDFR
DPYSIQCVQRINFGLPSIIEEPGSFHESSRSMDIDDEGMSNVAVCALLELSDSAAAMAKD
DPMNIDNGIETTSTSKHVCACCWEPDGLASANLVLCLDVGELYILEIHSTIEGIRVDISD
CLYRCVPCKELIWLKGGFVMGLIEMGDGFVLKLDDGGLVYKSIIQNIAPILDLAVVDDHD
EKQDQMFSCCGMSPVGSLRVIRTGLSVDKLVKTTPNYEGITGTWTLRMKKSDPYHSFLVV
SFVEETRVLSVGLNFVDVTDAIGFQADVCTLACGLVSDGFLVQIHRAGVRLCLPTTAAHV
NGFPLLIPFCTSWCPDYMSISSGAVGHNVIVVSTSSPCFLFVLGIRSLAAAYQHELYEIH
HWKLLHEVSCISIPEQEINFEQLLSIVHLAEKDNQETVCNGDGRCITFVIGTHAPSVEVI
FLAHDQDFRILSSGEISIDDPLETPISSCIPEDVRLVLVDRFYVLAGLRNGILLRYELSQ
TSVLSSSYYFVKNRGNIRSFQLELIAIRRLGAAPVVLVPLRDALDTDVVVLCEMPWLLHV
ARHSIVYTSISFQTATHVTAVSSFDCPNGILFVADSSLHLLELGHHKRINVRKFSIEGTP
RKVLYHKESKTLLILRTGLRDTPFSSDICRVDPFSGVVISKFPCELGETAKCMQIMKVGY
QHLLVVGTSQCPGRTIMPSGEAESTKGRLIILSLGNAQNTSESSTYQSNFSSPSRISSPL
HEVVGHSTEKLSCNSVGSSPDDCSSDGVKIEETEAGLLRVIYQNQLSGAVLAVCPFLNRY
LLASSGNILNVFCFVTENPLRLRRHSMTKTRFTITCLTTCFTRIAVGDCRDGILFYSYTD
DLRKLEQLYSDPVQRLVADCTLLDMDTAVVSDRRGSISVLSDVGELYGSDNPEKNLLVNC
SYYMGESVMSIRKGLFLYRSSVDDLLNDSDGTDIGCKSLDNNIVASTLLGSMLILIPVTS
EEHYLLETVQARLAVHPLTAPVLGNDHKEFRGRLSRAGVPTMLDGDMLLQFLELTLLEQE
AVLSLPLLENTDASSTSDSSDSYQPLCPNQVIQILERIHHAST
NT seq
4092 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaggagaaaaggattccggcagcgttagccctcaacagtcggcgccgaggccc
ggcgggtactacttggcgaagtacttacttcgtggtagtgccgtcatccacgcagtccga
ggccatctccgctccccgacctccgatgacatcgtatttggaaaggagacatctttggag
ttggtggtaattgatgaagatggaatagtgcaatcaatctgcgagcaacctgtatttggg
attatcaaagatcttgccatcttaggatggaatgataaatttaggcaatcaaggccacag
atgatagggaaagatcaattggtggttctttcagattcaggaaagctttcttttcttgcc
ttctcctttgagatgcataggttccttgcgatgaaccatatacaattgtccaagccagga
aattcgattgatcaggttggaagaatgctggctgttgacccggatggatgttttattgca
gctagcgcatttgaagaccaatttgctttgttttctatgtccacatctgttggagacaac
atgattgatgagaaaatgttctatccaccagaatacaaaggagaaacaagtcttataaag
gatgctatgaggacaaacgttcgtggtacaatttggagcatgtgctttgtttctcatggc
actgattgttcaagcacgggatattatccaatactggccactataatgcataggaaagca
agattaaggaatgaattgttgctgtttgggtgtaacataagaacacgtgctattcaattt
atttcatcataccctgaagctgaaattgggccattggcccttaatatatctgctgttcct
catctttctggatttgcagttgtgtttaggataggtgatgctctcctaatggattttaga
gacccatattctatacaatgtgttcaaagaataaactttggcttacctagtataattgaa
gaaccgggttcttttcatgagtcttctagaagtatggatattgatgatgaaggaatgtct
aatgtggctgtttgtgcattgctggaattgagtgattcagcagctgctatggccaaagat
gatcccatgaatattgacaatggtatagaaacaacttcaacttccaagcatgtatgtgcc
tgttgttgggaacctgatgggttagcaagtgcaaatttggtcctttgtttggatgtaggg
gaactttacatccttgaaattcattcaacaattgaaggaatcagagttgatatctctgat
tgcctctacagatgtgtgccctgtaaggagcttatatggctgaagggtggttttgtaatg
ggacttatagaaatgggagatggttttgttttaaagctggatgatggaggcctcgtgtac
aaaagcatcattcagaatattgcaccaattttggatttagctgttgttgatgaccatgat
gaaaaacaagatcaaatgttttcctgctgtggcatgagtcctgtgggatcattgagagtc
atacgaactggtttaagtgtggataagcttgtgaaaactactccaaattatgaaggaata
acaggaacttggacattgaggatgaaaaagagtgatccttatcattcatttcttgtagtg
tcttttgttgaggagacgagagttctctcagttgggttaaatttcgttgatgttactgat
gccattggttttcaggctgatgtctgtactctagcatgtggtttggtgtccgatggtttt
ctggttcagattcatagggcaggcgtgagactgtgtttgcccactacagctgctcatgtg
aatggtttccccctcttaataccattttgcacctcttggtgccctgattatatgtctatc
agttcaggtgcagtgggccataatgtgattgttgtatctacttctagtccttgctttttg
tttgttcttggcataagatcattagcagcagcatatcaacatgaattatatgaaattcat
cattggaagttgctgcatgaggtttcttgcatatccatacccgaacaagaaatcaacttt
gaacagctgttatcaattgttcatttagccgagaaagataatcaagaaactgtctgtaat
ggagatggacgttgcataacttttgtgattggtacccacgcaccatctgttgaagttata
tttttggcacatgatcaagactttaggatcctttcaagtggggaaatttcaatagacgat
ccgcttgaaactcctataagtagctgcatccctgaagatgttcggcttgtgttagttgat
aggttttatgtacttgctggcttgagaaatggaattctgcttcggtatgagttgtctcag
acatcagttctatcttcttcctattattttgtgaaaaaccgtgggaacatcagatctttt
caattagagttgattgctattcgacgccttggtgcagctcctgttgtgttggttcctttg
cgggatgcacttgatacagatgtagttgtactctgtgaaatgccctggcttttacatgtt
gcaaggcacagcattgtttatacatcgatctcattccaaactgctacccatgtaaccgcg
gtgtcctctttcgattgcccaaatggaattttatttgttgctgacagcagtttgcatttg
cttgaactgggtcatcacaagagaattaatgttcgtaagttctcaattgaaggaactcca
cggaaggtattataccataaagaaagtaagacattgctaatattgaggacgggacttagg
gatactccattctcatcagatatatgccgtgtggatccttttagtggagttgtgatatca
aagttcccatgcgagcttggtgaaacggcaaaatgtatgcaaataatgaaagtaggatat
cagcatctattagttgttgggactagtcagtgtcctggtcggactatcatgcccagcggt
gaagctgaaagtacaaagggaaggcttatcatattaagcttgggaaatgcacaaaatacc
tctgaaagcagtacctatcagtctaatttctcatcaccttctcggatttcttcgcctctg
catgaagttgttggacattcaactgaaaagttatcatgcaacagtgttggcagcagtcca
gatgattgtagtagtgatggagttaaaattgaagaaacggaggctgggttgttaagggta
atttatcagaatcaattgtctggtgctgttcttgctgtctgcccatttctaaatcgttat
ctattggcgtcctctggtaatattttgaatgtcttctgctttgtcactgaaaatcctctg
cgactgagaaggcattccatgaccaaaacacgctttaccataacttgtttgactacatgt
ttcactagaattgctgttggtgattgtcgtgatggcatccttttctactcctatacagat
gatcttaggaaattggaacagctctattctgacccagttcagagattggttgctgactgt
actctgctagatatggacactgctgttgtctcagaccgtagagggagcatctcagttctg
tcagatgttggtgaattatatggtagtgacaatccagaaaagaacctgttggtaaattgt
tcctattacatgggagagtctgttatgagcatccgaaagggtttatttttgtacagatcg
tcagtggatgacttgttgaatgattctgatggcactgatataggttgcaagtctttagat
aataacattgttgcaagcacacttcttggaagtatgctcatacttattcctgttacaagt
gaggaacattatttgttagagactgtgcaggcaaggcttgctgttcatcctttgactgct
cccgttctaggaaatgaccataaggaatttcgcggacgtctttcgcgggccggagttcca
accatgcttgatggagatatgctcctccaattcctggagttaactttactggaacaggaa
gctgtgctctctctccctctccttgagaacacagatgcttcttctacctctgattcttct
gattcatatcaacctctctgtccgaatcaggtcattcagatactggagagaatccatcat
gcttccacttga
DBGET
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