KEGG   Dendrobium catenatum: 110096155
Entry
110096155         CDS       T05027                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
dct  Dendrobium catenatum
Pathway
dct03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dct00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110096155
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:dct03041]
    110096155
Spliceosome [BR:dct03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    110096155
 Complex C
   U5 SnRNP specific factors
    110096155
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_TEP1_2nd WDR55 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_EML WD40_MABP1-WDR62_1st Beta-prop_EIPR1 NBCH_WD40 Beta-prop_SPT8 ANAPC4_WD40 Beta-prop_RIG_2nd WD40_RFWD3 Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_DCAF4 Beta-prop_IFT140_1st Beta-prop_WDR35_TULP_N Beta-prop_WDR19_1st Beta-prop_WDR75_2nd Beta-prop_DCAF12 Beta-prop_HPS5 eIF2A Beta-prop_Nup120_160 Cytochrom_D1
Other DBs
NCBI-GeneID: 110096155
NCBI-ProteinID: XP_020677604
LinkDB
Position
Unknown
AA seq 340 aa
MLAVPNQGDNALAFPRPRPGSELALHAPFPAGKHRTSSLESPIMLLTGHQSAIYTMKFNP
AGTVVASGSHDKDIFLWFVHGDCKNFMVLHGHKNAVLDLQWTSDGSQIISASPDKTLRAW
DVETGKQVKKMAEHSSFVNSCCPSRRGPPLVVSGSDDGTAKLWDLRQRGAVQTFPDKYQI
TAVSFSDASDKIFSGGLDNDVKVWDLRRNEVTMTLQGHGDMITGMQLSPDGSYLLTNGMD
CTLRIWDMRPYAPQNRCVKIFSGHQHNFEKNLLKCAWSPDGSRVSAGSSDRMVYIWDTTS
RRILYKLPGHNGSVNETAFHPTEPIIGSCSSDKQIYLGEI
NT seq 1023 nt   +upstreamnt  +downstreamnt
atgcttgctgtgccaaaccaaggagacaatgctctggcttttcctagacctaggccaggg
tctgagctggctctccatgcaccatttcctgctggaaagcatcgcacctctagcctggaa
tcacccatcatgctcttaactggccatcagagcgccatttacacgatgaagtttaaccca
gctgggactgttgtcgcctcaggttcccatgacaaggacatctttctatggtttgtacat
ggcgactgcaagaacttcatggtcctccatggccacaaaaatgctgtgcttgatctccag
tggacttctgatgggtctcagataatctctgcaagccccgacaagactcttcgagcttgg
gacgtcgagactggaaagcaggttaagaagatggcagaacactcctcgtttgttaactcg
tgctgtccgtcccgtcggggacctccgctggttgtcagcggttcagatgatggcacagcc
aaactgtgggatctccggcagcgcggcgccgtgcagacatttccagacaagtaccagatc
actgcagttagcttttctgatgcatctgacaagatcttctccggtgggctggacaatgat
gtgaaggtgtgggatctgcggagaaatgaagttaccatgactctccaggggcatggtgac
atgatcactggaatgcagctgagcccagatggttcatacctcctaaccaatggaatggat
tgcactctgaggatatgggacatgagaccatatgcaccacagaaccgttgtgtgaagata
ttttctggacaccagcacaactttgagaagaatctcctcaagtgtgcgtggtcgccggac
gggagcagggtctcggccgggagctctgataggatggtttacatctgggacaccacatca
aggaggatcctgtacaagctcccgggtcataatggatcagtgaacgaaacagcttttcat
cccactgagcctatcattggctcttgcagcagcgacaagcagatttatcttggggagatt
tga

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