Dendrobium catenatum: 110096178
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Entry
110096178 CDS
T05027
Name
(RefSeq) probable polyribonucleotide nucleotidyltransferase 1, chloroplastic isoform X1
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
dct
Dendrobium catenatum
Pathway
dct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110096178
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dct03019
]
110096178
03016 Transfer RNA biogenesis [BR:
dct03016
]
110096178
Enzymes [BR:
dct01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
110096178
Messenger RNA biogenesis [BR:
dct03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
110096178
Transfer RNA biogenesis [BR:
dct03016
]
Prokaryotic type
tRNA degradation factors
110096178
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_RRP5_4th
DUF6293_C
Motif
Other DBs
NCBI-GeneID:
110096178
NCBI-ProteinID:
XP_028557117
LinkDB
All DBs
Position
Unknown
AA seq
951 aa
AA seq
DB search
MLASCMLHGGTLPSLPSPPLFFLRTRTLSLPFSCRGTLLSESAERPRWNRFYLHSLSARR
TLLRVAESSEVTENVEEESSSAPLKHSIKIPVGDRHILVETGHIGRQASASVTVTDGETI
VYTSVCLADVPSEPCDFFPLSVFYQERLSAAGRTSGGFFKREGRAKDHEVLICRLIDRPL
RPTMPKGFYHETQILSWVYSYDGIHSPDCLAVTAAGIAVALSEVPNTKIVAGVRMGLIGD
KFVVNPTTNEMESSELDLMLAGTDSAILMIEGFCNFLTEEKLLKAVEIGHVAVRDICREV
ETLVKMCGKPKMVEAIKLPPDELYRHVEDISGYELVNALQISSKIPRRKALSVLEEKVIS
ILTEKGYVAKDQVSGTTDVVNDKCDNEDEDEDEEVVSDGEVDEGDVHIKPARKPIPLLFS
EVDVKLVFKEVTSKFLRKRIVEGGRRSDGRIPSEIRSINAQCGVLPRAHGSALFTRGETQ
SLAVVTLGDKQMAQRIDNLVDTEEAKRFYLQYLFPPSCVGEVGRIGAPNRREIGHGMLAE
RALEPILPSEEDFPYTVRVESTITESNGSSSMASVCGGCLALLDAGVPVKCSVAGIAMGL
VLDTEEFGGDGTPLILSDISGSEDASGDMDLKVAGNENGITAFQMDIKTAGITLPVMEKA
LVQAKDGRSHVLYEMLKCSPPPSKKLSKYAPLIHVMKVKPEKIHLIIGSGGKKVKSIIEE
TGVEGIETQDDGIVKITARDLSSLEKSKAIIANLTMVPTVGDIFRDCEIKSIAPYGVFVE
IAPGREGLCHISELSSEWLAKAEDAFKVGDRLDLKLIEVNEKGQLRLSRRALLPDATPES
TVSKNQTSLGEEENDSVNTASKVAFVRVESIEQKSVQSVNTRESKILSKKSVFTRKATSV
PAKAEEMIRRLVRPVRESSVANKEKQSKSDVKAVRVSSREPNLVDDEAKIG
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atgctagcaagctgtatgcttcatggcggaactcttccttcattgccttcgccacccttg
ttctttctcagaacgcgaaccctatctctacccttttcatgccgcggcactctcctaagt
gagagtgcggagcgtccgcgctggaatcgtttttatctccactctctgagcgcgaggaga
actttactaagagttgcggagtcgtcggaagtcacggagaacgtcgaggaagagagctct
tctgcgccgctgaagcactcgatcaagatacccgtgggcgaccggcatatcttggttgaa
actggtcatattggtaggcaagctagtgcttctgtgacggttactgatggtgaaactata
gtttatacttctgtttgtttagctgacgtgcctagcgagccttgtgatttcttcccattg
tcagttttctatcaagagagactttcagctgcaggccgaactagcggtggattttttaaa
cgggagggcagagcgaaagatcatgaggttcttatttgcagactgatagatagaccattg
cgtccgacaatgccaaaaggtttctaccatgaaactcagattctatcatgggtttacagc
tatgatggcattcattcgccggattgtttggctgttacagcagcaggcatagcagtagcc
ctctcagaagttccaaacacaaaaatagttgcaggggttcgaatgggtttgattggtgat
aagtttgttgttaacccaactaccaatgagatggagtcttcagagcttgatctgatgctt
gcaggaactgacagtgctatcttgatgatagaaggattttgtaactttcttacggaggag
aagttgcttaaagctgtggaaattgggcatgttgcagtacgtgacatttgcagggaagtg
gaaactttggtcaagatgtgtggaaagccaaaaatggtcgaggcaattaaattgccaccg
gatgagctttatagacatgttgaagatatttcaggatatgaactggtgaatgctttacaa
ataagtagcaaaataccaagaagaaaggctctttccgtgttggaagagaaagttataagc
atcctcaccgagaaagggtatgttgccaaggatcaggtgtcaggaacaactgacgtggta
aatgacaaatgtgataatgaggatgaggatgaggatgaggaggttgtttctgatggtgaa
gttgatgaaggagatgttcatatcaagcctgctcggaagcctatcccattgttgttctcg
gaagttgatgtgaagctagttttcaaggaagttacttcgaaatttctgcgcaaacgaatt
gttgaggggggtagaagaagtgatggtcgaattccttcggagattcgctcaatcaatgca
caatgtggagtactaccacgagcacatggaagtgcgcttttcactcgtggagagacacag
tctcttgctgtggttactcttggagacaagcaaatggcacaaaggattgataatcttgtt
gacacagaagaggcaaagaggttttatcttcagtacttatttcccccctcttgtgttggt
gaagttgggcgaattggtgcacctaacaggagggagattggtcatggaatgcttgctgag
agagcattggaacctatcttaccttctgaagaggattttccttacactgttcgtgttgaa
agtaccattactgaaagtaatggatcctccagcatggcttcagtttgtggaggttgtcta
gcacttttagatgctggagttcctgttaaatgctctgttgctggaatagcaatgggttta
gtcttggacactgaagaatttggtggagatggaacaccattgatactttctgatattagt
ggatctgaagatgcatccggtgacatggatctcaaggttgctggtaatgagaatggaatt
actgctttccagatggacataaagactgcaggaatcactttaccagtgatggaaaaagca
cttgtgcaagcaaaagatgggcgaagtcatgtcctttatgaaatgttgaagtgctcacct
cctccatccaaaaagctttccaagtatgccccactgattcatgttatgaaggtcaaaccg
gagaaaattcatcttattattggttctggtgggaaaaaggtgaaaagcatcattgaggaa
actggagtagaagggatagagactcaagatgatggaattgtaaaaattactgcaagggat
ttgtccagcttagagaagtctaaagctataatagctaatttgacaatggttccaactgtt
ggtgacattttcagggattgtgaaattaaatcaattgcaccttatggagtttttgtggag
attgcaccggggcgtgagggactttgtcatattagtgagcttagttcagaatggttggct
aaggctgaggatgcctttaaagttggagatcgcctagatttaaaacttattgaggtaaat
gaaaagggacaactacgactgagccgtcgtgctttgcttcctgatgcaacccctgagagt
actgtttctaagaatcaaacaagcttgggtgaagaggaaaatgattctgttaacactgcc
tcaaaagtagcttttgtcagagttgaatcaattgagcagaagtctgtacagtctgtgaat
accagggaaagcaagattctttcaaagaagtctgtttttaccaggaaagctacttcagtc
cctgctaaagctgaggaaatgattcggagattagttcgtccagtgagagaaagctcagtt
gccaacaaggagaaacaaagcaagagcgatgtaaaagcagtccgggtatcctccagagaa
cctaatttagttgatgatgaagctaaaattgggtga
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