Dendrobium catenatum: 110096722
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Entry
110096722 CDS
T05027
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
dct
Dendrobium catenatum
Pathway
dct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110096722
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dct03019
]
110096722
03041 Spliceosome [BR:
dct03041
]
110096722
03009 Ribosome biogenesis [BR:
dct03009
]
110096722
03016 Transfer RNA biogenesis [BR:
dct03016
]
110096722
Enzymes [BR:
dct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110096722
Messenger RNA biogenesis [BR:
dct03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
110096722
Spliceosome [BR:
dct03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
110096722
Complex C
U4/U6.U5 tri-SnRNP related factors
110096722
Ribosome biogenesis [BR:
dct03009
]
Eukaryotic type
Pre-60S particles
Helicases
110096722
Transfer RNA biogenesis [BR:
dct03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
110096722
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
110096722
NCBI-ProteinID:
XP_020678441
LinkDB
All DBs
Position
Unknown
AA seq
1000 aa
AA seq
DB search
MEIVPGTGKRKLSKEALDENPSPADETQNSESAVKRRNISRTCIHEVAFPDDFSSSNNES
IHGTLENPIYVGKMAKTYPFELDPFQRVSIACLERNESVLVSAHTSAGKTAVAEYAIAMS
FRDKQRVIYTSPLKALSNQKYRELNQEFSDVGLMTGDVTLSPHASCLVMTTEILRGMLYR
GTELLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICK
LHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDENEQFKEDNFAKLQETFTKQKNQVD
GHRNVKASSRIAKGGTASAGSDIYKIVKMIMERKFQPVIIFSFSRRECEQHAMSMAKLDF
NTEEERDVVEQVFKNAILCLSEEDRNLPAIQLMLPLLQRGIAVHHSGLLPIIKELVELLF
QEGLVKALFATETFAMGLNMPAKTVVFTSVRKWDGDSNRYIGSGEYIQMSGRAGRRGKDE
RGICIIMIDEKMEMDVLKDMVLGKPAPLVSTFRLSYYTILNLLSRAEGQFTAEHVIKNSF
HQFQYEKSLPDMNKKISKLETEAAMLESSGETELADYHNLGLEIAQLERKIMSEITRPER
ILYYLVPGRLVKVREGGTDWGWGVVVNVVKKPPSGAGSLQPALAASRGSSYLVDTLLNCS
LGSSDNGSRQKPFPPCPGERSEMHVVPVPLHLISGISNIRISFPPDLRPAEARQTVLLAV
QELHKKFPHGLPRLNPVKDMGINDPELTELVHKFEELEQKLAAHPLHESTQTEKQYQWFQ
RKAQLNHEIQLLKSKMRDSQLQKFRDELKNRSRVLKRLGHIDADSVVQLKGRAACLIDTG
DELLVTELMFNGTFNDLDPHQAVALASCFIPGDKSSDQVFSRIELAKPLQQLQDSARKIA
EIQRECKLDINVEEYVEATVRPYLMDVIYCWSKGATFAEVIEMTDIFEGSIIRLARRLDE
FLNQLKAAAHAVGEINLEKKFESGTESLRRGIMFANSLYL
NT seq
3003 nt
NT seq
+upstream
nt +downstream
nt
atggaaatagtaccaggtacaggcaagaggaaactttcgaaagaagctttagatgaaaat
ccctcaccagctgatgaaactcagaattctgaaagtgcagtgaaacggcgcaatatatct
cgaacttgcatccatgaggttgcttttccagatgattttagttcatcaaataatgaatca
attcatgggacattagagaatccaatctatgttggaaaaatggctaaaacgtatccattt
gaattagatccattccaacgagtttcaattgcttgtctagagcggaatgagtctgtcttg
gtatctgctcacacttccgctggtaagactgcagtagctgagtatgccatcgcaatgtcc
ttccgtgacaagcagagggttatctacacctcacccttgaaagctttaagcaatcagaaa
tacagagagttaaatcaggagttttctgatgttggtttgatgaccggtgatgtgaccctc
tcacctcatgccagttgcctagtcatgacaacagagatactcagaggaatgctctatagg
ggtacagaattactaaaggaggtagcatgggttatttttgatgagatacactatatgaag
gaccgagaaagaggggttgtgtgggaggagagcataatttttttgccaccagcaatcaag
atggtatttttatctgcgaccatgtcaaatgccacagaatttgccgagtggatatgcaag
ttgcataaacagccctgtcatgtagtttacacggacttcaggcctacacctttacagcac
tatgtgtttccggtgggtggatctggtttgtacctggtggtggatgagaatgagcagttt
aaagaggataattttgcaaagctgcaggagactttcactaagcaaaagaatcaggtggat
ggccaccgaaatgtaaaagcaagtagccggattgcaaagggtggtactgcttcagcgggt
tctgacatatacaagattgtgaagatgataatggagcggaaattccaaccagtaataatc
ttcagctttagcagaagggagtgcgagcagcatgctatgtccatggctaaacttgacttt
aacaccgaagaagaaagggatgttgttgaacaggtttttaaaaatgctatcctctgcttg
agcgaggaagatagaaatttaccagctattcagctaatgcttccactacttcaacggggc
atagcagtccatcattcaggactgcttccaataattaaggagttagtagagttgctattc
caggaaggccttgtcaaagctctttttgccacggaaacatttgctatgggcctgaatatg
cctgcaaagactgttgttttcacatctgtgagaaaatgggatggtgacagcaatcgttat
attggatctggtgaatacattcagatgagtggaagagctggccgtcgtggtaaagatgag
cgtggcatttgcattataatgattgatgagaagatggaaatggatgttctcaaggacatg
gttttgggtaaacctgcccctttggtcagtactttcaggttgagttattacactattcta
aatttactgagccgtgctgagggtcaatttacagccgagcatgttataaagaattcattc
caccagttccagtatgagaagtctttgccagacatgaacaaaaagatttcgaagttggaa
acagaagcagctatgcttgaatcctcaggcgagactgaacttgctgattatcataatttg
ggacttgaaattgctcaacttgaaaggaagatcatgtctgaaatcaccaggcctgaaagg
attttgtattatttagtcccgggtaggctggtcaaggtacgggagggtgggactgattgg
ggttggggagttgtagttaatgtggttaaaaaacctccttcaggagcaggttcattacaa
cctgcacttgctgcttcacgtggtagtagttacctcgtcgatactttgcttaattgttct
cttggttcaagcgacaacggttctcgccaaaagccattcccaccttgtcctggagaaagg
agtgaaatgcatgtggttcctgtaccgttacatctaatatccggcatcagcaatataaga
atttcattccctcctgatcttcgtcctgcagaggcaagacagacagtacttctagctgtg
caggaactgcataagaaatttcctcatggactccccaggttaaatcctgtcaaggacatg
ggtatcaatgatccggaacttactgaattagttcataaatttgaagaactggagcagaaa
ttagccgctcatccactgcatgagtctacccaaactgagaagcaataccaatggttccaa
agaaaagctcagctaaatcatgaaatccaactgcttaagtccaagatgagggattctcag
ctacaaaagttccgtgatgagctgaaaaaccgttcaagggttctaaagaggcttggtcac
atagacgcagacagtgtagttcagttgaaggggcgtgctgcctgtctgattgacactggc
gatgaacttcttgtcacggagcttatgtttaatggtacatttaatgatctcgatccacat
caagctgttgcccttgcaagctgctttattcctggagataaatcaagtgatcaagtattt
tcgagaattgagctagcaaaacctttacaacagcttcaggatagtgccagaaaaatagcc
gagatacaacgtgagtgcaaattggacataaatgtggaggagtatgttgaagcaactgta
agaccatatttgatggatgttatctactgttggtcgaagggcgcaacgtttgcagaggtg
attgaaatgacagatatttttgagggaagcattatacgcctagccagacggctagatgaa
ttcttgaaccagttgaaagctgctgcccatgctgtaggagagatcaatctggagaagaag
tttgaatcaggcactgaaagccttcggcgtggaataatgttcgccaactctctgtacttg
tag
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