Dendrobium catenatum: 110097530
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Entry
110097530 CDS
T05027
Name
(RefSeq) regulator of nonsense transcripts UPF3
KO
K14328
regulator of nonsense transcripts 3
Organism
dct
Dendrobium catenatum
Pathway
dct03013
Nucleocytoplasmic transport
dct03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110097530
03015 mRNA surveillance pathway
110097530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dct03019
]
110097530
Messenger RNA biogenesis [BR:
dct03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110097530
mRNA cycle factors
P-body specific factors
110097530
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
110097530
NCBI-ProteinID:
XP_020679611
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MKDPLERTKVVLRHLPPSLTEPALTEQIEDKFSGRYKWFFFRPGKSSPKNGRYARAYIDF
KSPADVFEFAEFFDGHVFVNEKGTQFKVLVEYAPSQSIPSTWIKKDGREGSIFKDPDYLE
FVELLAKPTENLPSAEIQLERRESERSGAKEAPIITPLMDFVRRRRAAKSGSQRAFGNGK
PSRRALVGGNSSSPSSRRCSEKRRGPSLKYISKDSTKNGSGKEKPTYMLVTRRDEQRSEK
PPKFPFSNIEDDIQDETGTVTNGIVSGVSVAVETGKRALLLLKGKEREGSHIQRLEVPGR
IIKSILSKEGNQVSASQPDHQFITVNIENDKRPPRPPVQQSNLKDHASSSLHTFVSDADG
KSHKVDKAASSELYANVSIRDNKIEKRMRNKDRPDRGVWAPLHRSDVFQGHVTNFLPSNE
IGAGHRNKKFDTPGGNRSSESKRLGVGRGHHASLDNGVTRHAVRRGMTHGSKDLDVSAST
AEAKPSKRGPIPYEKQVWVQKNGSAS
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgaaggatcctttggagaggacgaaggtcgtactccgacacttgccgccgtctctcact
gaacctgctctcacggagcagattgaagacaagttttccggccggtacaagtggttcttc
tttcggccgggcaagagcagcccaaagaatggtagatatgctcgagcttacattgatttc
aagagccctgcagacgtcttcgagtttgctgagttctttgatgggcatgtatttgtcaat
gaaaaaggcactcagtttaaggttctagtagaatatgctccatctcaaagcattccaagt
acatggatcaagaaagatggtcgggaagggtctatattcaaggatcctgactatttggag
tttgttgagcttcttgcaaagcctacggaaaatctccccagtgctgaaattcagcttgaa
aggagagagtccgaaagatctggtgcaaaggaggcaccaataataacaccactgatggat
tttgttaggcggagaagggcagctaagagtggatctcagagagcatttggtaatggaaaa
ccaagtcgaagagctttagttggtggtaatagctctagtccttcctctagacgttgttct
gagaagcgaagagggccctccttaaagtatatttcaaaggacagtacaaagaatggttct
ggcaaggaaaagccaacttacatgttagtgacaagaagggatgaacaacgttctgagaaa
ccccctaaatttccattttcaaatattgaagatgacattcaggatgaaacagggactgtt
acaaatggaattgtatccggagtttctgttgctgtggaaaccgggaaaagggcacttttg
cttttgaaaggaaaagaacgtgaaggttctcatattcagcggcttgaggtgcctggaaga
attattaaaagcatattatccaaggaagggaatcaggtgtcggcatctcaaccagatcat
caatttattacggttaacatagagaatgacaagcgccctccccgaccacctgtccagcag
tcaaatttgaaggatcatgcttccagttcactacacacttttgtttctgatgctgatgga
aaatcacataaagttgataaggctgcttcaagtgaattgtatgctaatgtatccatcagg
gataataagattgaaaaacgcatgagaaataaagatagacctgatcgtggggtatgggca
ccccttcatcgctctgatgtttttcaaggacacgtcactaattttctcccaagcaatgaa
ataggagcgggtcatagaaataagaaatttgatactccaggtggtaatagaagttcagaa
tctaagaggcttggagttggacgagggcatcatgcttctttggacaatggtgtcactagg
catgcagtccgtcggggaatgacacatggttcaaaagatttggatgtctctgcaagtaca
gcggaggctaagccatcaaaaagaggccctattccatatgaaaaacaagtatgggttcag
aagaacggctctgcttcatga
DBGET
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