Dendrobium catenatum: 110097827
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Entry
110097827 CDS
T05027
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
dct
Dendrobium catenatum
Pathway
dct03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110097827
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dct03041
]
110097827
03009 Ribosome biogenesis [BR:
dct03009
]
110097827
Enzymes [BR:
dct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110097827
Spliceosome [BR:
dct03041
]
Complex A
U2 snRNP components
U2 related factors
110097827
Complex B
110097827
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
110097827
Ribosome biogenesis [BR:
dct03009
]
Eukaryotic type
90S particles
Helicases
110097827
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
AAA_22
DEAD
nSTAND3
AAA_7
AAA_19
SRP54
AAA_29
ABC_tran
RsgA_GTPase
FtsK_SpoIIIE
T2SSE
Motif
Other DBs
NCBI-GeneID:
110097827
NCBI-ProteinID:
XP_020680085
LinkDB
All DBs
Position
Unknown
AA seq
698 aa
AA seq
DB search
MSTEKRREYNIAHTGGATALLLPAMFNRWTGRKYSQRYFEMLDKRKTLPVWKKKFQFLQY
LHDNQTVILVGETGSGKSTQIPQFVLEADFLEKHSMVACTQPNRVAAMSVSRRVAEEMDV
TIGEEVGYIIQFEDCSSPKTILKYLTDCMLLREAMADPLLERYKVIILDKAHERTLATDV
LFGYLIEVLRNRPDLKLVIMSATLEVEKFQGWFNGAPLMKVPGRLHPVEIFYTVDPERDY
LEAAIRTVVQIHLYQPPGDILVFLTGEEAENACRKITEEICNLGDQVGPIKVFPLYSTLS
PAMQQEIFQPAPAPLNEDGPPVRKIVVSTNIAETSLTIDGIVYVIDPGFSEQYVYNPRIR
AESVLVSPISKSSAHQRSRCAGRTQTGKCFRLYPERSFNNDLQPQSYPEILRLNLATTVL
TLKKLGIDDFVLFFLDPPATETLMRALEVLNYLGALDDDGNLNKLGEIMSEFPLDPQMSK
MLVVSAEFNCSNEILSISAMLSVPNCFVRPREAKTAADEAKAHFGHIDGDHLTLLNVYHA
YKQNNEDPSWCFDNFINQRALKAADNVRQQLVRIMARFNFKLCSSDFNSPDYYVNIRKAL
LAGYFTQVAHLERTGHYLTMKDNQVVHLHPSNCLDHKPEWVIYNENVLTRKNFIRTVTDI
PGDWLIDIAPHYYDPSNFPSCEAKRVLKRLYRDTKNKK
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacggagaaaaggcgcgaatataacattgcgcacactggcggtgctacggcactg
cttctgccggcgatgttcaaccgatggacggggcggaagtattcacaaaggtactttgag
atgcttgacaagaggaagacacttccggtatggaagaagaaattccagttccttcaatac
ctccatgacaatcagacagttattcttgttggagaaactgggagtggcaagagcacccag
atacctcaatttgttttggaagccgacttcttagaaaaacattcaatggttgcttgtaca
caacctaatagagtggcagctatgtctgtttctcgtcgggttgctgaggagatggatgta
acaattggagaagaggttggttatatcattcaatttgaagattgcagcagccctaaaact
attttgaagtacctaactgattgtatgctgttaagagaagcaatggctgatccacttttg
gagaggtataaggtgatcatccttgataaggctcatgagcgaaccttagcaacggatgtt
ctttttggttatctcatagaggttctaagaaatagacctgatctaaaattagttatcatg
agtgcaactcttgaggttgagaaattccaaggatggtttaatggagctcccttaatgaag
gtacccggaaggctgcatcctgtagagatcttctatactgtagatcctgagagggattat
ttggaagctgcaattaggactgtagtacagatacacttgtatcaaccccctggcgacatt
cttgtttttcttacgggtgaggaggcagagaacgcctgtcggaaaattaccgaggaaatc
tgtaatttgggtgatcaagttggtcctattaaagttttccctctgtattctactttgtct
ccagcaatgcaacaggagatatttcagcctgctccagctcctcttaatgaggatggtcca
cctgtaaggaagattgtggtatcaactaatattgcagagacatctttgactattgacggc
atagtttatgttattgatccgggtttctcagaacaatatgtttataacccacgaattcgt
gcggagtcagtgttggtttctccgatttccaaatcaagtgctcatcagaggtcaaggtgt
gctggtagaacacaaactgggaaatgctttagactttaccctgaaagaagttttaataat
gatctacaaccccagagctatcctgaaattctcaggctgaatctagcaaccacagttctt
acattgaagaaacttggaattgatgattttgttcttttttttttggatcctcctgcaact
gagaccttgatgcgggccttggaagttttgaactacttgggtgctctagatgatgatgga
aacctaaataagttaggtgaaatcatgagtgaatttccattggatccacagatgtcaaag
atgcttgttgttagtgcagagtttaattgttctaatgaaattctatcaatttctgctatg
ctatcagtacccaattgctttgtgcggcccagggaagctaaaacggctgctgatgaagca
aaagctcattttggccacatcgacggggatcacctaactcttttaaatgtgtatcacgcg
tacaagcaaaataatgaagacccttcatggtgttttgataattttataaaccaaagggca
ttgaaggctgctgacaatgtgaggcagcaacttgtgcgtattatggccagattcaacttc
aagctttgcagctcggacttcaacagtcctgattattatgtaaacataagaaaagcattg
cttgcaggatactttacacaggtagctcatctagaaagaactgggcattacttgacaatg
aaggataaccaggttgttcatcttcatccttcaaactgcttagatcacaagcctgagtgg
gtaatctacaatgaaaacgttttgaccagaaagaactttattcgcacagttacagatatc
cctggcgactggctgattgacatagctccacactattacgaccccagcaactttccctca
tgtgaggcaaagcgagttctgaaaaggctgtatagagataccaagaacaagaaataa
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