Dendrobium catenatum: 110097831
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Entry
110097831 CDS
T05027
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
dct
Dendrobium catenatum
Pathway
dct03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110097831
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dct03041
]
110097831
03009 Ribosome biogenesis [BR:
dct03009
]
110097831
Enzymes [BR:
dct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110097831
Spliceosome [BR:
dct03041
]
Complex A
U2 snRNP components
U2 related factors
110097831
Complex B
110097831
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
110097831
Ribosome biogenesis [BR:
dct03009
]
Eukaryotic type
90S particles
Helicases
110097831
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
SRP54
ABC_tran
nSTAND3
T2SSE
AAA_30
Flavi_DEAD
AAA_7
AAA_29
Motif
Other DBs
NCBI-GeneID:
110097831
NCBI-ProteinID:
XP_020680091
LinkDB
All DBs
Position
Unknown
AA seq
725 aa
AA seq
DB search
MSTERKRKVSLFDVVDEAAVSTKLARVNGSFTAGAAAPLLPVTINRWTGRTYSQRYFEIL
DKRKTLPVWQQKDEFLQVLRDNQTLILVGETGSGKTTQIPQFVLEADFLGKRPMVACTQP
RRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSAKTILKYLTDGMLLREAMADPLLER
YKVIILDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQGYFNGAPLMKVP
GRLHPVEIFYTQDPERDYLEAAIRTVVQIHMCETPGDILVFLTGEEEIEDACRKITKEIN
NLGDQVGPIKAVPLYSTLPPAMQQKIFEPAPAPLKEGGLPGRKIVVSTNIAETSLTIDGI
VYVIDPGFSKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNND
LQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDG
NLTKLGEIMSEFPLDPQMSKMLVVSSEFNCSNEILSVSAMLSVPNCFVRPREAQKAADEA
KARFGHIDGDHLTLLNVYHAYKQNNEDPSWCFDNFINQRALKAADNVRQQLVRIMARFNL
KLCSTDFNSRDYYVNIRKALLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEW
VIYNEYVLTSRNFIRTVTDIRGEWLIDIAPHYYDLSNFPSCEAKRVLERLYSKREKDKQD
TKNRK
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacggagaggaagcggaaggtcagcctcttcgacgtagtagacgaggcagcggtc
tcgacgaagctggctcgggtaaacggatcgttcactgcaggcgctgccgcgccgcttttg
cctgtgacgatcaaccgatggacagggcggacatactcgcaaaggtacttcgagatcctg
gacaagaggaagacacttcccgtatggcagcagaaagatgagttccttcaagttctccgt
gacaatcagacccttattcttgtcggtgaaactgggagtggcaagaccacccagatacct
caatttgtcttggaagctgacttcttaggaaaacgtccaatggttgcttgtacacaacct
cgtagagtggctgctatgtctgtttctcgtcgagttgctgaggagatggatgtaacaatt
ggagaagaggttggttatagcattcgatttgaagattgcagcagtgctaaaactattttg
aagtacctaactgatggtatgcttttaagagaagcaatggctgatccacttttggagagg
tataaggtgattatccttgatgaggcacatgagcgaacattagcaacggatgttcttttt
ggtcttctcaaagaggttctaagaaataggcctgatctaaaattagttgtcatgagcgca
actcttgaggctgagaaattccaaggatattttaatggagctccactaatgaaggtacca
ggaaggctgcatcctgtagagatcttctatactcaagaccctgagagggattatttggaa
gctgcaattaggactgtagtacagatacacatgtgtgaaacccctggtgacattcttgtt
tttctcacgggagaggaggagatagaggatgcctgtcggaaaatcacaaaggaaatcaat
aatttgggtgatcaagttggtcctattaaagcggtccctctttattctactttgcctcca
gcaatgcaacagaagatatttgagcctgctccagctcctctaaaggagggtggtttacct
ggaaggaagattgttgtatcaaccaacattgcagaaacatctctgactattgatggtata
gtttatgttattgacccaggtttctcaaaacagaaggtttataacccacgaattcgtgtg
gagtcattgttggtttctccaatttccaaagcaagtgctcatcagagatcagggcgtgct
ggtagaacgcaacctgggaaatgctttagactttacactgaaaaaagttttaataatgat
ctacaaccccagacctatcctgaaattctcaggtcgaatctggcaaacacagttcttaca
ttgaagaaacttggaattgatgatcttgttcattttgattttatggatcctcctgcacct
gagaccttgatgcgggccttggaagttttgaactacttgggtgctctagatgatgatgga
aacttaactaagttaggtgaaatcatgagtgaatttccattggatccacagatgtcaaag
atgcttgttgttagttcagagtttaattgttctaatgaaattctatcagtttcagcaatg
ctatcagtacccaattgctttgtgcggcctagggaagctcaaaaagctgctgatgaagca
aaagctcggtttggccacatcgacggggatcacctaactcttttaaacgtgtatcacgct
tacaagcaaaataatgaagacccttcatggtgttttgataattttattaaccaaagggca
ttgaaggctgctgacaatgtgaggcagcaacttgtgcgtataatggccagattcaacctc
aagctttgcagcacagacttcaacagccgtgattattatgtaaacataagaaaagcattg
cttgcaggatactttatgcaagtagctcatcttgaaagaactgggcattacttgacagtg
aaggataaccaggttgttcatcttcatccttcaaactgcttagatcacaagcctgagtgg
gtaatctacaatgaatacgttttgactagcaggaactttattcgcacagttacagatatc
cgtggcgagtggctaattgacatagctccacactattacgacctcagcaactttccctca
tgtgaggcaaagcgagttctggaaaggttgtatagtaagcgtgagaaagacaagcaagat
accaagaacaggaaataa
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