Dendrobium catenatum: 110098903
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Entry
110098903 CDS
T05027
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
dct
Dendrobium catenatum
Pathway
dct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110098903
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dct03019
]
110098903
03036 Chromosome and associated proteins [BR:
dct03036
]
110098903
Enzymes [BR:
dct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110098903
Messenger RNA biogenesis [BR:
dct03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
110098903
mRNA degradation factors
5'-3' decay
Decapping complex
110098903
Chromosome and associated proteins [BR:
dct03036
]
Eukaryotic type
Gene silencing
piRNA pathway
110098903
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Cas3-like_C_2
TFIIA
Motif
Other DBs
NCBI-GeneID:
110098903
NCBI-ProteinID:
XP_020681511
LinkDB
All DBs
Position
Unknown
AA seq
422 aa
AA seq
DB search
MNPRGRYPPGIGNGRGGGAGPNPNFYPRGPQPQQQYVQRNPLPSQQNQIYHNQQQQQQRY
QQWLKRNESNSGAGELVKSVTTQGSDSSSQDWKTQLRVPPPDTRYKTEDVTATKGNDFED
YFLKRELLMGIYEKGFEKPSPIQEESIPIALTGVDILARAKNGTGKTAAFCIPALEKIDQ
EKNVIQVVILVPTRELALQTSQVCKELGKHLKVQVMVTTGGTSLKDDIMRLYQPVHLLVG
TPGRILDLAKKDICVLKDCSMLIMDEADKLLSSEFQPSIGQLIRFLPANRQILLFSATFP
VTVKDFMDRYLRKPFIINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFC
NSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTGITLYSVDLI
RV
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgaaccctagaggaaggtatccccctggtattggaaacggccgcggtggtggcgctggc
ccaaaccctaatttctatccaagagggccgcagccgcagcagcagtacgtgcagagaaat
cccttaccaagccagcagaatcaaatataccacaaccagcagcagcagcagcagcgctat
cagcaatggctaaagcggaatgaaagcaattccggtgctggcgagttggtgaaatcagtc
accactcaaggcagtgattccagttcccaagattggaagacgcagttgagagtgccacct
ccagatacgcgctacaagacagaggatgtaactgcaactaaaggaaatgactttgaagat
tattttctgaagagggagctacttatgggaatatacgagaaaggatttgaaaaaccttca
cctattcaggaagaaagcatcccaattgctctaaccggagttgacattctggctagagct
aaaaatggaaccggaaaaactgctgccttctgcattccagcattagaaaaaattgatcaa
gaaaagaacgttattcaagttgtcatattggttcctacaagggaattggctcttcaaaca
tctcaggtttgcaaggagctcgggaagcacttgaaggttcaggtaatggtaactactgga
ggaactagcttgaaagatgacatcatgcgcttgtatcaacctgtccacttgctcgttgga
acacccggtcgaatcctagatctcgcaaagaaggatatttgtgttctgaaagattgttcg
atgctcattatggatgaggctgacaagcttctatcttctgaattccaaccgtcaattgga
caactaattcgctttcttcctgcaaatagacaaatattgttgttttcagccacgtttcct
gttactgtcaaggatttcatggacagatatctgagaaaacccttcataatcaacctaatg
gatgaactgactctcaagggaataacacaatattatgcttttgtcgaagaaaggcagaaa
gtgcattgcctaaatacacttttctcaaagctacaaatcaaccaatctattatattctgt
aactctgtcaaccgggtagaattattggcaaagaaaatcactgagcttggttactcatgc
ttctacatccatgcaaaaatgttgcaagatcatagaaatcgtgtttttcatgactttcgc
aatggcgcatgcagaaatcttgtctgtacaggtataactttgtattctgttgacttgatt
cgagtataa
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