Dendrobium catenatum: 110099031
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Entry
110099031 CDS
T05027
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
dct
Dendrobium catenatum
Pathway
dct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110099031
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dct03019
]
110099031
Messenger RNA biogenesis [BR:
dct03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110099031
mRNA degradation factors
5'-3' decay
Decapping complex
110099031
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40
WD40_Prp19
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_Vps41
Beta-prop_EML_2
Beta-prop_TEP1_C
WD_LRWD1
DUF445
Motif
Other DBs
NCBI-GeneID:
110099031
NCBI-ProteinID:
XP_020681703
LinkDB
All DBs
Position
Unknown
AA seq
1402 aa
AA seq
DB search
MAFHGGNSNQFDMQKLFKPPNPLPNPNPNPNPNPNPNLNAPFLPPTSYAAGVPHIPYQTV
QPTGAFNYAPSTPPFHHHPFIHYPQETRQRPVVSYPVQPSYSPDPNSRPNSPGQNPGARL
MALLGNNPPAQLDFAASMPAASAPTELPAMHHAVPSAPPAVMAITQAQPARIPSTKMPRG
RPLGGGERAVHDVESRLPGETQLPQLEVTPITKYTSDPGLVLGRQIAVNKTYICYGLKLG
AIRVLNINTALRSLLRGHSQRVTDMAFFAEEVHLLASASVDGKVFVWKIDEGPDHEDKPQ
ITGKLVLAIHLIGDRDYHPRICWHSHKQEILVVGIGNNVLRIDIPKVGRGVEFSADEPLK
CSLEQLVDGVQLVGRHAAEVSDLSISQWMTTRLASASNDGTVKIWDDRKTLPLLTLRPHE
GQPVHSVSFLTSPQRPDHIVLLTSGPLNRELKLWSSATEEGWLLPSDSESWRCNQTLELR
SSTEQRVEEAFFNQVVVMPQESLILLANAKKNAIYAVHIYYGPYPAATCMDYIADFTVTM
PILSLTGTSDIFPDGEHVVQVYCVQTQAIQQYALSLAQCMPPVDNLLLGKDPCISHIYDG
ICSEGFSASELSRVPSDIPSAGASSMLLVGASNSENLFVYSPTFVSSEANNIPELPSSNI
DIHPSAPPLPAVGTDNLHATSSPGPLDLGLSGRLSGSKGVSKGLEHGHSLGELDVYQEIA
DHHATNGEHDGAGNMPNISLMNDNSAGDNLKTSPNDISMIQNSHLMFKLGGKTTHLVTPL
EILSGVKPSSETTSSNQRSDEVKVLDLICNSDLRHAEVVKVVDENVMDQTEEFITLKEEN
NASNAIKDQPSSSLASNIKNDVPKDGDALNGLYNVNEVQVGDNVISADAVEQFSGNIEEN
VLKNTTDLSQRETGFVDIPASKTAKGKRQKTKQAQASGSSSPSSSPVNSIDSSNEPRSST
VVPPTEASFSQIMSIQEVLNQILSMQKEMNKQISTAVSGPVTKEGRRVEIALGRSMEKSV
KANIDALWARFLEENARREKTERDHLQHISSLITNFINKDLPAALERMLKKEIPSIGTAI
TRSITPVIEKTISSTIVDSFQRGVGDKAVNQLEKSVNSKLEATITRQIQAQFQTAGRQAL
QDALRSSLESSLIPAFEQSCRSMFEQVDATFHKGMSEHNAAALQQFESTHTPLALSLREA
INSASSVAQNLTSELADGQRKLLALASGNAKSLNPMVMQQSNSSMVNLPEMLALSVQQVE
APLDPTKELSRLISEFKYDEAFTVALQRSDVSIVSWLCSQVDLHGICSMVPLPLNQGVLL
ALLQQLTCDIGNDTSRKLAWMTDVAAAINPADPIIALHVRPIFEQVYNMLAHQRTLASMT
TAEASSIRLIMHVINSVLLSCK
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atggcctttcatggcggcaattccaatcagtttgatatgcagaagctcttcaagcccccc
aatcccttgcctaatcctaaccctaaccctaaccctaaccctaatcctaaccttaacgct
cccttcctccctcctacctcttacgccgctggcgttcctcatattccctatcagacggtg
cagcctactggtgccttcaactacgcgccgtccactccccctttccatcaccatcccttt
attcactacccgcaagaaacccgccaacgtcccgtcgtttcctatcccgtccaaccctct
tactcaccagaccctaattctaggccaaatagcccaggacagaatccgggcgcccgactc
atggccctcctcggaaacaaccctccggctcagctcgactttgccgcatcgatgccagcg
gcgtctgccccgacggagctccctgcgatgcatcatgcggtgccttctgctccgccggct
gttatggcgattacccaggcgcagccggcgaggataccgagcacaaagatgccaaggggg
aggcctcttggaggaggggaacgagctgttcacgatgtagagtcgaggttgccgggggag
acgcaactgccgcagctcgaggtcacgccgatcacgaagtatacgtcggatccggggttg
gtacttggaaggcagatcgccgtcaacaagacctacatctgttatgggcttaagcttgga
gcgatcagggttctgaacatcaacactgcactaagatcactcctccgggggcattcacag
agagtgacagacatggctttctttgcagaagaagtgcaccttttagcaagtgcaagtgta
gatgggaaggtttttgtatggaagattgatgaaggacctgatcatgaagacaagcctcaa
atcacaggaaaacttgttcttgctattcacttgattggagacagagattatcatccaaga
atttgttggcactcacacaaacaagaaattttggttgttggaattggaaacaatgtatta
agaattgatatcccaaaagttgggagaggtgtggaattttcggcagatgaaccactgaaa
tgttctcttgagcaactcgttgatggggtgcaattggtgggaagacatgctgcagaagtt
tcagatttgtcaatatcacaatggatgacaactcgcttagcttcagcatcaaatgatggc
acggtaaaaatatgggatgatcgtaagacactgccccttctaacattgaggccacatgaa
ggccaacctgtccattcggtttcattcttgacatctccccaacgccctgatcacattgtt
cttctcacttcgggtccattgaaccgtgaattaaagttatggtcttctgcaactgaagag
ggatggttgttacccagtgattctgaatcatggcgatgcaatcaaactttggaattgaga
agttcaacagaacaacgggtagaggaagcgttttttaatcaagttgttgttatgcctcaa
gaaagccttatattacttgcaaatgccaagaagaatgcaatatatgctgtccatatatat
tatggtccgtaccctgcagcaacatgcatggactatattgccgactttaccgttacaatg
cctattttgagcctcactggaacaagtgacatctttcctgatggtgaacatgtggttcaa
gtttactgcgtccaaacacaggctattcaacaatatgccttgagtttggcacagtgtatg
ccacctgttgataaccttctattgggcaaagacccttgtatttcacatatttatgatgga
atttgttcagaagggttttctgcatctgagctttctcgtgttcctagtgatattccatcg
gccggtgcttcatccatgcttttggttggtgcaagcaactctgagaacctgtttgtctat
tctccaacttttgtatcttcagaagctaacaatattcctgaattgccttcatcaaatatt
gacattcatccttctgctcctccacttccagctgttggcactgataatttacacgccact
tcatctcctggtcctttagatttgggcctctcggggagactttcaggttccaaaggtgta
tctaaaggtctggaacatggacattcacttggggagcttgatgtttaccaggaaattgct
gatcatcatgctacaaacggagaacatgatggtgctggaaacatgcctaatatttctttg
atgaatgacaactctgcaggggataacttgaaaactagtccgaatgatatttctatgatt
cagaattctcacttaatgttcaagttgggtggaaaaactactcacttggtgactccatta
gaaattttgtcaggggtcaagccttcatctgaaaccacttcttccaatcagaggagtgat
gaagtgaaggttctagatctgatctgcaacagcgatttgaggcatgcagaggtagtgaaa
gttgtggatgagaatgtaatggatcagactgaagaattcattactctgaaagaggaaaat
aatgcttctaatgcgattaaggatcaaccttcaagttccctagcttcaaatatcaagaat
gacgtgccaaaagatggtgacgcacttaacggtctttataatgtgaatgaagttcaggtg
ggtgataatgtgatttctgctgatgcagttgagcagttttctggtaatattgaggaaaat
gtcttgaaaaatacaacagatctttctcaaagagaaactggatttgttgatattcctgct
tcaaaaactgcaaaaggaaagaggcaaaaaaccaagcaggctcaagcatcaggttcatca
tcaccatcttcaagccctgtcaactccattgattcttcaaatgaaccacggagcagcacg
gttgtacctccaacagaggcttctttttcccaaattatgtctatccaggaggtgttgaac
cagattttgtctatgcaaaaggagatgaataagcagatcagcacagcagtgagtggccca
gtcacaaaagaagggagaagagttgaaattgctttgggccggagcatggaaaaaagtgtt
aaggctaatatcgatgccttgtgggctcgttttcttgaagaaaatgcaagacgtgagaag
actgaaagggatcatttgcagcatatatcaagtttaatcacaaattttatcaacaaggac
ttacctgctgctttggagaggatgctaaagaaggagataccttccatagggacagcaata
actcgttcaattacccctgtaattgaaaaaactatttcttcaactatagttgattcgttc
cagagaggtgtgggtgacaaggcagtgaaccagctggaaaaatcagttaattctaaactt
gaagcgacaataacaaggcaaattcaagcacagttccagacagcaggcagacaagccctt
caggatgctctacggtccagcttggaatcctccttaattcctgcatttgagcagtcatgt
agatccatgttcgagcaagtagatgccacctttcacaagggcatgagtgaacataatgct
gctgcactgcagcagtttgaatccacacatacgccattggcactttctttgagggaagca
attaattccgcttcatctgttgcccaaaacttaacaagcgagttagctgatgggcagcgc
aagctcttagctcttgcttcaggaaatgccaaatccttaaatcctatggtaatgcaacaa
agcaacagttctatggtcaatctccctgaaatgctggccctctccgttcagcaagttgag
gcacctcttgatcctacaaaagaactatcaagattgatttctgaattcaaatatgatgaa
gcattcactgtagctcttcaaaggagtgatgtttccattgtgtcctggctatgctctcaa
gttgatttgcatggaatatgttctatggtgccacttcctctaaaccaaggtgtcctcctt
gcacttctgcaacagctgacttgtgatattggcaatgatacttcaaggaagctggcatgg
atgactgatgtagctgcagctatcaatccggcagacccgattatcgcattgcacgtacgg
cccatattcgagcaggtttataacatgctagcacaccagagaaccctagcttccatgacc
acagccgaagcttcgagcattcggctaataatgcatgtaataaactctgtgctattgagc
tgtaaatga
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integrated database retrieval system
