Dendrobium catenatum: 110099286
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Entry
110099286 CDS
T05027
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
dct
Dendrobium catenatum
Pathway
dct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110099286
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dct03019
]
110099286
03041 Spliceosome [BR:
dct03041
]
110099286
03009 Ribosome biogenesis [BR:
dct03009
]
110099286
03016 Transfer RNA biogenesis [BR:
dct03016
]
110099286
Enzymes [BR:
dct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110099286
Messenger RNA biogenesis [BR:
dct03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
110099286
Spliceosome [BR:
dct03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
110099286
Complex C
U4/U6.U5 tri-SnRNP related factors
110099286
Ribosome biogenesis [BR:
dct03009
]
Eukaryotic type
Pre-60S particles
Helicases
110099286
Transfer RNA biogenesis [BR:
dct03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
110099286
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
MTR4_beta-barrel
ATPase_2
Motif
Other DBs
NCBI-GeneID:
110099286
NCBI-ProteinID:
XP_020682041
LinkDB
All DBs
Position
Unknown
AA seq
651 aa
AA seq
DB search
MQIVPGTGKRKHLKEALDENPTPANETQKFESAVKRRNISQTCIHEVAVPDYFNSSNDEL
IHGSLNNPIYDGLMAKKYPFKLDSFQRVSIACLERNESIFVSAHTSAGKTAVAEYAIAMS
FRDNKRVIYTSPLKALSNQKYRQLNQEFLDVGLMTGDVTLSPHANCLVMTTEVLRGMLYR
GTKLLEDVAWIIFDEIHYMNDRERGVVWEESIIFLPPTIKMVFLSATMSNAIEFAEWICK
LHKQPCHVVYTDFRPTPLYHYVFPVGGSQLYLVVDENEQIKEDRFPKLQETFKRKASRRI
AKRGTASARDIFNILKIIMRRKLQPVIIFSFSRWGCERLATSIAKSKLDFNSDEEKDVVE
HVFKNAILCLSEKDRNLPAIRLMLPPFQRGIAVHHSGLLPIIKELVELLFQEGLIKALFA
TETFAMGLNMPAKTVVFTSVRKWDGVRHRYIGSGEYIQMSGRAGRRGKDERGISIIMINE
KMKMDVLKDMVLGKPAPLVSTFRLSYHSILNLLSRAEGQFTAEHVIKNSFHQFQYEKSWS
GMNKKISKLETEVAMIESSGETEVADYHNLELEIAQLEKKIMSGITRSTVKDMRIKPPEL
TELLFKIKELKHKLAAHPLHELHVAFFDLLVGAMAPNQEVLNSKLAYTMVM
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgcaaatagttccaggaactggcaagaggaagcatttgaaagaagctttggatgaaaat
cccacacccgcaaatgaaactcagaagtttgaaagtgcagtgaaacggcggaatatatct
caaacatgcatccatgaggttgctgttccagattattttaattcatcaaatgatgaattg
attcatgggtcattaaataatccaatatatgatggattaatggccaaaaaataccctttt
aaattagattcattccagcgagtttcaattgcttgtttggagcggaatgagtctatcttc
gtatctgctcacacttctgctggtaagactgcagtagctgagtatgctattgcaatgtcc
ttccgtgacaataagagggttatctatacctcacccttgaaagccctcagcaatcaaaag
tatagacaattaaatcaggagtttttggatgttggtttgatgactggcgatgtgaccctc
tcacctcatgccaattgtctagtcatgacgacagaggtacttagaggaatgctgtatagg
ggcacaaaattacttgaggatgttgcatggattatttttgatgagatccactatatgaat
gatcgagaaagaggggttgtgtgggaggagagcataattttcttgcctccaacaatcaag
atggtgtttttgtctgcaaccatgtcaaatgccatagaatttgcggagtggatctgcaag
ttgcataaacagccctgtcatgttgtttacacggacttcaggcccacacctttatatcac
tacgtgttcccggttggtggatctcaattataccttgtggtggatgagaatgagcagatt
aaagaggatcgttttccaaaattgcaggagacattcaaaagaaaagcaagtagacggatt
gctaagcgtggtactgcttcagctcgagacatattcaacattttgaagataataatgagg
cgaaaattacaaccagtaataattttcagctttagcagatgggggtgcgagcggcttgct
acgtccatcgctaaaagtaaacttgactttaactcagatgaagaaaaggatgttgtagaa
catgtttttaaaaatgctatcctctgcttgagcgagaaagatagaaatttaccagctatt
cggctaatgcttccaccatttcaacggggcatagcagtccatcattcaggactgcttcca
ataattaaggagttagtagagttgctattccaggaagggcttatcaaagctctttttgcc
actgaaacttttgctatgggcctgaatatgcctgcaaagaccgttgttttcacatctgtg
agaaaatgggatggtgtcaggcatcgttacattggatctggtgaatacattcagatgagt
ggaagagctggccgtcgtggtaaagatgagcgtggcattagcattataatgattaatgag
aagatgaaaatggatgttctcaaggacatggttttgggtaaacctgcccctttggttagc
actttcaggttgagttatcacagtattctaaatttactgagccgtgctgagggtcaattt
acagccgagcatgttatcaagaattcattccaccagttccaatatgagaagtcttggtca
ggcatgaacaaaaagatttcaaagttggaaacagaagtggctatgattgaatcctcaggc
gagactgaagttgctgattatcataatttggaacttgaaattgctcaacttgaaaagaag
atcatgtctggaatcaccaggtcaactgtcaaggacatgcgtatcaaacccccggaactt
actgaattactctttaaaattaaagaactgaagcataaattagctgctcatccactgcat
gagttgcatgtagctttctttgatttgttggttggagctatggctcccaatcaagaggtc
ttgaattcgaagcttgcgtatacgatggtcatgtga
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