Dendrobium catenatum: 110100224
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Entry
110100224 CDS
T05027
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
dct
Dendrobium catenatum
Pathway
dct03013
Nucleocytoplasmic transport
dct03015
mRNA surveillance pathway
dct03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110100224
09122 Translation
03013 Nucleocytoplasmic transport
110100224
03015 mRNA surveillance pathway
110100224
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dct03019
]
110100224
03041 Spliceosome [BR:
dct03041
]
110100224
Enzymes [BR:
dct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110100224
Messenger RNA biogenesis [BR:
dct03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
110100224
Spliceosome [BR:
dct03041
]
Complex C
Other components
EJC/TREX
110100224
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
110100224
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
110100224
NCBI-ProteinID:
XP_020683303
LinkDB
All DBs
Position
Unknown
AA seq
473 aa
AA seq
DB search
MYASKRGKKKNPPASKTFLSRPSVSRNPKSIVLYADVCRIYFFLRMGEVRENDVYEDELL
DYDDEEEKATVSLGVKINGESAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQH
ECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPISGQVAALVLCHTRELAYQICHEF
ERFSTYLPEIKVAVFYGGVHIGKHKDILKNECPHIVVGTPGRILALARDKDLSLRNVRHF
ILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDD
EAKLTLHGLVQHYIKLSDLEKNRKLNDLLDALDFNQVVIFVKSVNRAAELNKLLVECNFP
SICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLH
RVGRAGRFGTKGLAITFVSSASDSDVLNQVQARFEVDIKELPEQIDTSTYMPS
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgtacgcgtctaaaaggggaaaaaagaaaaatccgccggcaagcaaaacctttctgtct
cgtccttccgtctctcgaaaccctaaatccattgttctgtacgccgacgtctgtcgaata
tacttctttctaaggatgggtgaagtaagggaaaacgacgtctacgaggacgagcttctc
gactatgatgatgaagaagagaaggccactgtctctcttggtgtaaaaatcaatggtgaa
tcagcaaagaagggttatgtaggaatccacagctccggatttagagattttttgttgaaa
ccagaacttctacgggctatagttgattctggatttgagcacccatctgaagtacaacat
gagtgcatacctcaagccattttgggaatggatgtcatctgccaagcaaagtctggaatg
gggaaaacggcagtgtttgttctctcaacccttcaacaaattgagccaatttctggtcaa
gttgctgcacttgtcttatgtcatactagagaactagcgtaccagatatgccatgagttc
gagagattcagcacttacttgcctgaaataaaagttgctgtattttatggtggcgttcac
attggaaagcacaaggacatactgaaaaatgaatgtcctcatatagttgttggaacacca
ggaagaattctggcactcgctagggataaagatctttctctgaggaatgttaggcacttc
attctcgatgaatgtgacaagatgctagagtcgctagacatgcggagagatgtgcaggag
atcttcaaaatgactccacatgacaagcaagtcatgatgttttcagccacactaagcaag
gagatacgccctgtttgcaagaaattcatgcaagatccaatggaaatatatgtggatgat
gaagcaaaactaaccctccatgggcttgtacagcactacatcaaactcagtgatttggag
aagaaccgtaaattaaatgatcttctggatgctctggacttcaatcaggttgtaattttt
gtcaaaagtgtcaatagagcggcagagctgaacaaattgctagtagagtgcaacttccca
tctatctgcattcattctggaatgtcacaggaagaaagattaacaaggtacaagggcttc
aaggaaggacacaaaaggattcttgttgctactgatctggttggcaggggaattgacatt
gagcgtgtaaacattgtgattaactatgacatgcctgattctgcggatacttacttgcac
agggttggtagggctggcagatttggcaccaagggtctggctattacctttgtctcttca
gcttccgattcagatgttcttaatcaggttcaagcaagatttgaagtggacattaaggaa
ttgcctgagcaaatagatacttccacatacatgccttcataa
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