KEGG   Dendrobium catenatum: 110100342
Entry
110100342         CDS       T05027                                 
Name
(RefSeq) THO complex subunit 6 isoform X1
  KO
K13175  THO complex subunit 6
Organism
dct  Dendrobium catenatum
Pathway
dct03013  Nucleocytoplasmic transport
dct03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dct00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110100342
  09122 Translation
   03013 Nucleocytoplasmic transport
    110100342
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dct03019]
    110100342
   03041 Spliceosome [BR:dct03041]
    110100342
Messenger RNA biogenesis [BR:dct03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     110100342
Spliceosome [BR:dct03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    110100342
SSDB
Motif
Pfam: Beta-prop_WDR3_1st Beta-prop_WDR5 Beta-prop_IFT122_1st WD40 Beta-prop_THOC3 WD40_Prp19 WD40_WDHD1_1st Beta-prop_WDR41 WDR55 WD40_Gbeta EIF3I Beta-prop_TEP1_2nd Beta-prop_WDR3_2nd Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_ACSF4 Beta-prop_WDR36-Utp21_2nd Beta-prop_NOL10_N Beta-prop_RIG_2nd Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_EIPR1 DSE1_N Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 Beta-prop_Nup120_160 Beta-prop_VPS8
Other DBs
NCBI-GeneID: 110100342
NCBI-ProteinID: XP_020683451
LinkDB
Position
Unknown
AA seq 413 aa
MNQISSCRKSPFPLSRRLRMPERSVMEARRITSRGLGGDSREWDEEGYRRSILVERELSS
RIVFRTAFAPSENPNPEIVLVASSDGSLSAYSISSCISSCPRPILCSKGTDQKAPEVLWA
DPLCSIQAHKGPSYDLKLYGNDEEALLLSCGDDGCIRGWKWAEVHMAAVQASNKGEKLSP
IFELVNPQKEGPWGALSPIPENNAIAVDKEDGSIFSAAGDSCAYWWDMETGKRKIVFKGH
SDYLHSVVIRKSSNQIITGSEDGTARVWDCRSGRCAQVIYPEKCSKLKESSWISSVALDN
SESWLVCGTGRGLSAWSLLSYECIFSFDSHAPIQDLLFHDNQILAVGAEPVLRCFNINGK
ILSQIQCAPSSAFSISVHPSGVTAIGGYGGLVDVISEFGSHLCIFGCKNAGSF
NT seq 1242 nt   +upstreamnt  +downstreamnt
atgaatcaaatttcttcttgtaggaaaagccctttcccgctctcgcgacgcttgcggatg
ccagagcgttcggtcatggaggcccgaagaatcaccagcagaggacttggaggagactcg
agggagtgggacgaagaaggttatcggcgtagcattcttgtggagagggagctcagctca
cgcatcgtcttcaggaccgccttcgctccctccgaaaaccctaatcctgaaatcgtactg
gtggcttctagcgacggatctctctccgcttattccatttcctcttgcatctcttcctgt
cctcggcctattctttgtagcaaggggaccgatcaaaaggcacctgaagttttgtgggct
gatccactttgttcaattcaagcacacaaaggcccatcatatgatttgaagttatatgga
aatgacgaggaagctttactattgagctgcggtgatgatggttgcatcaggggctggaaa
tgggcagaagtccatatggctgcagttcaagcgtcaaataaaggcgaaaagttgagtcca
atattcgagttagtgaaccctcagaaagaaggtccatggggtgcgctttccccaattcca
gaaaacaatgccatcgcagttgacaaagaggatggatctattttttcagctgctggagat
tcttgtgcttattggtgggatatggagacaggcaaaaggaaaatagtcttcaagggccac
tcagattacctccattctgttgttatacgtaaatccagcaatcagattattactggttct
gaagatggcactgcgagggtatgggactgcagaagcggaagatgtgctcaagttatatat
cctgagaagtgcagcaagttgaaggaatcttcctggatcagttccgttgcacttgataat
agtgaaagttggttggtctgtggaacaggtagaggtttatcagcttggagcctgctttca
tacgagtgtattttcagctttgatagccatgccccaattcaagatctattgtttcatgat
aatcaaattctggcagttggtgctgaacctgtgctgagatgtttcaacattaatggaaaa
attctttcacaaatccaatgcgctccttcttcggcattttcaatttctgtgcatccttca
ggggtcacagcaattggtggttatggtggactggtggatgtcatctcagaatttggcagc
catttgtgcatatttggttgtaaaaatgcaggttctttttaa

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