Dendrobium catenatum: 110100855
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Entry
110100855 CDS
T05027
Name
(RefSeq) regulator of nonsense transcripts UPF2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
dct
Dendrobium catenatum
Pathway
dct03013
Nucleocytoplasmic transport
dct03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110100855
03015 mRNA surveillance pathway
110100855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dct03019
]
110100855
Messenger RNA biogenesis [BR:
dct03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110100855
mRNA cycle factors
P-body specific factors
110100855
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
MIT
Motif
Other DBs
NCBI-GeneID:
110100855
NCBI-ProteinID:
XP_020684211
LinkDB
All DBs
Position
Unknown
AA seq
1249 aa
AA seq
DB search
MSASAEFLRRCSTSIPFDDAPFLVDRKLRHFLIGSNNGSLLSVKCGYCWALFTGEMEHPE
EECHTVGEHHCKHDDDENVSRTEYKRSIDMKIVLRQSNLNPERPDSGFLRTLDSSIRRNT
AVIKKLKQINDEQREGLIEELRSVNLSKFVSEAVAAICDAKLKTSDIQAAVQACSLLHQR
YKDFSPSLIQGLLKVFSPGKSVDDLEADKSLKAMKKRSTLKLLLELYFVGVVEDASIFVN
IIKDFTGLEQLKDRDATQTNLSLLTSFARQGRFFLGMHQPGQEVDEEFYKGLNVTVEQKK
QFKKALHSYYDAVTELLQAEHSSLRLMELDNAKILNARGELSEDNVTAYEKLRKSYDHLF
RGVSSLAEALDMQPPLMPEDGHTTRVASGVDTESTASGKESVPEPIWDDDDTRTFYESLP
DLRAFVPAVLLGEAEAKLNEQILKNQEQQNEHALEPENVVQENVEVNVDTELSLDGKADE
KAKDEEKDKEKGKEAEKEKHKVKESERKGDEKDKLKALDGASLDALLQRLPGCVSRDLID
QLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVPSILVSLLEE
EFNFLINKKDQTNIETKIKNIRFIGELCKFRIAPSGLVFTCLKACLDDFNHHNIDVACNL
LETCGRFLYRAPETSIRMTNMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARVNK
VRPPLQQYIRKLLFSDLDKSSAEHVLRQLRKLPWDECEQYILKCFMKVHKGKYSQVHLIA
LLTAGLSRYHNEFAVAVVDEVLEEIRIGLELNNYNMQQRRIAHMRFLGELYNYEHIDSSV
IFETLYLILVFGHGTPEQDALDPPEDCFRIRMIITLLQTCGHYFDRGSSKRKLDRFLMYF
QRYVLSKSQIPLDIEFDIQDMYAELRLNMIRYTSIEEVNVALVELEEHERDKASTEKHSD
SESQKAPSKSAITSVTLNGSRSPVNELDENGQGHEDAAESDSYSGSGSIDQEGHDDDEDV
PYEDKIDDGSDGDDDDDDDGGPDGSDDDDNIQVRQKVVEVDPKEEEEFDRELRAVMQESI
ESRRLDLRARPALNMMMPMNIFEGSKDPRVAEGESGEETVDEEGGSGVLNNKVRVKVLVK
KGNKQQTKQMFIPRESSLVQSTKQQEAAELEEKQNIKKKILEYNEREEEESNGLSSQSSN
WMASSSGSGSSGGKPSGRVNWEAAGRTAVPKQQRHHSTSSFYPAHGRRK
NT seq
3750 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcgagtgcagagtttcttcgtcgctgttcgacttcgatccccttcgacgacgct
cccttcctggtggatcggaagttacgacattttttgatcggaagcaacaacgggagcttg
ctttctgtgaagtgtggatactgctgggctttgtttacgggagaaatggagcatccagaa
gaagaatgtcatacagttggggaacatcactgcaagcatgatgatgatgaaaatgtttct
cggactgaatacaaacgatctattgacatgaaaattgttcttcgtcagagcaatctgaac
cctgaaagacctgattcaggttttcttaggacactggactccagtatcaggcgcaacacc
gcagtaatcaagaagcttaagcagataaatgatgagcagcgggaagggctaattgaggag
ttacgaagtgtgaaccttagtaaatttgttagtgaagctgtggcagctatctgcgatgct
aagcttaaaacctcagatatacaagctgctgtccaggcatgctcattgcttcatcaaaga
tataaggatttctcccctagcttgattcagggtctcctgaaagttttttcccctggaaaa
agtgtagatgatttggaagctgataaaagcctgaaagcaatgaagaagaggagcactttg
aaacttcttctggaactttattttgttggcgttgtggaggatgctagcatttttgttaac
attattaaagactttacaggcttagagcaattgaaggaccgtgatgcaactcagacaaac
ttgtcccttcttactagttttgctcggcaaggaaggttctttttgggcatgcatcagcct
ggacaagaagttgatgaggagttctataaggggcttaatgtgactgtggagcagaaaaaa
caattcaagaaagcattgcactcgtactatgatgctgtcactgagctgctgcaggcggaa
catagttcacttcggctgatggaacttgacaatgcaaagatattaaatgctagaggggag
cttagtgaagataatgtgactgcatatgaaaagcttcgtaaatcttatgatcatttattt
cgtggtgtttcatcgcttgctgaggcccttgacatgcaacctccattgatgcctgaagat
ggacatacaactagggtcgctagcggagtagacaccgaatctactgcttctggaaaggag
tcggtacctgaacctatctgggatgatgacgatacaaggaccttttatgaatccttacct
gatctcagagcatttgttcctgctgtgttgctgggagaagcagaagcaaaattaaatgag
caaattttgaaaaaccaagagcaacaaaatgaacatgctctagagccagaaaatgtagtg
caagagaatgttgaagtcaatgtagacacagaattgtcccttgatgggaaagcagatgaa
aaggctaaagatgaagaaaaagacaaggaaaaaggtaaagaggccgaaaaagagaaacat
aaagtgaaggaatccgagaggaaaggggatgagaaggataagttgaaagctcttgatggt
gcaagtttggatgctctgttgcaaagacttccaggttgtgtaagccgtgatcttattgac
cagctaacggtggagttttgctatttaaattccaaagcaaatcggaagaagcttgtacgg
gctttgtttaatgttcctagaacgtctttagagttattgccatactattctcgcatggtt
gcaacgttatcaacgtgtatgaaggatgttccaagtattcttgtatcattgctcgaagag
gagttcaactttttgataaataagaaggatcaaacaaatattgagacgaagataaagaat
atcaggtttattggcgagctgtgcaaatttagaattgcaccttcaggtcttgtttttact
tgcttaaaggcttgtttggatgattttaatcatcataacatcgacgtggcttgcaacctt
cttgagacttgtgggcgttttctatatcgtgcgcctgaaacttcaattcgcatgacaaat
atgttggaaatattgatgcgtctgaaaaatgtaaaaaatttagatcctcgtcatagcaca
cttgtggagaatgcctattacttgtgcaaaccacctgaacggtctgctcgggttaacaaa
gtgcgccccccattgcagcagtatatcagaaaattgcttttctcagatcttgacaagtcc
tctgctgagcatgtacttagacaactgcgcaaacttccatgggatgagtgtgaacaatat
attcttaagtgttttatgaaggttcataaggggaagtacagtcaagtgcatttgattgct
ttgctcacagcaggtctcagccgctaccacaatgaatttgcagttgcagttgttgatgag
gtattggaggagattcggattggactggaactgaataactacaatatgcagcagcggcgc
atcgctcacatgagatttttaggggagttatacaactatgagcacattgactcatctgtc
atatttgaaacgctgtacttgattcttgtttttggccatggaactccagagcaagatgct
ttagatccaccggaagattgcttccgtataagaatgattataacacttcttcagacatgc
gggcactattttgacagaggttcctcaaagaggaaactggatcggtttttgatgtatttt
caaagatatgtgcttagtaaaagtcaaataccactagatattgagtttgacattcaggac
atgtatgccgagctaaggttaaatatgatccgctacacatcaattgaggaagtcaatgtt
gcattggttgagcttgaggagcatgagcgcgataaggccagcactgagaagcactccgac
agtgagtctcagaaggctccatccaaatcagccattacctctgttactttgaatggtagc
cggagcccggtgaatgaacttgatgagaatggccaaggccatgaggatgctgctgagagc
gatagctactctggcagtggcagcattgatcaagaggggcatgatgatgatgaagatgta
ccttatgaggacaagattgatgatggatctgatggtgatgatgatgatgatgatgatgga
ggacctgatggttctgatgacgatgataacattcaggttagacagaaggtcgtggaagtt
gaccccaaagaagaagaggaatttgatcgagagctacgtgcagttatgcaagagagcatc
gagtctcggagattggatcttcgtgccaggcctgcattaaacatgatgatgccaatgaat
atttttgaggggagcaaggaccctagggttgctgagggggagagtggtgaggaaacagtg
gatgaagaaggtggtagtggagttctgaacaacaaggttcgggtgaaggtccttgtgaag
aaggggaacaagcagcaaacaaagcagatgtttattccacgggagtcttcactggtgcag
agtacaaaacaacaagaagcggcggagctggaggagaagcagaatataaaaaagaagatc
ctggagtacaatgaaagggaggaggaggagtcgaatggtctgtcatcgcaatccagcaac
tggatggcaagcagctctggtagtggcagcagtggcggaaagccgtcaggccgggtaaat
tgggaagctgcagggaggacagcagttcccaagcagcagcgacatcattcaactagtagt
ttttatcctgcccacgggagaagaaagtga
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