KEGG   Dendrobium catenatum: 110102030
Entry
110102030         CDS       T05027                                 
Name
(RefSeq) coatomer subunit alpha-1
  KO
K05236  coatomer subunit alpha
Organism
dct  Dendrobium catenatum
Brite
KEGG Orthology (KO) [BR:dct00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:dct04131]
    110102030
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:dct04147]
    110102030
Membrane trafficking [BR:dct04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    110102030
Exosome [BR:dct04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   110102030
  Exosomal proteins of bladder cancer cells
   110102030
SSDB
Motif
Pfam: COPI_C B-prop_COPA_B_2nd Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 WD40_Prp19 Beta-prop_THOC3 Beta-prop_WDR36-Utp21_2nd WD40_WDHD1_1st Beta-prop_WDR3_2nd WDR55 WD40_CDC20-Fz Beta-prop_EML_2 WD40_Gbeta EIF3I Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_2nd Beta-prop_EML TPR_COPA_B Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EIPR1 WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st Beta-prop_SCAP ANAPC4_WD40 Beta-prop_WDR41 Beta-prop_DCAF4 Beta-prop_SPT8 WD40_RFWD3 NBCH_WD40 Beta-prop_Aladin Beta-prop_IFT140_1st Beta-prop_RIG_2nd Beta-prop_IFT122_1st Beta-prop_WDR19_1st Fis1_TPR_C Beta-prop_At4g14310 ENTH Beta-prop_ELP1_1st ThaI PAPS_reduct zf-CHCC
Other DBs
NCBI-GeneID: 110102030
NCBI-ProteinID: XP_020685833
LinkDB
Position
Unknown
AA seq 1222 aa
MLTKFETKSNRVKGISFHRKRPWIISSLHSGVIQLWDYRVGTLIDRFEEHDGPVRGLHFH
KLQPLFVSGGDDYKIKVWNYKTRLCLFTLLGHLDYIRTVQFHDEYPWVVSASDDQTIRIW
NWQSRVCISVLTGHNHFVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVTPADDTLR
LSQMNTDLFGGVDAVVKYILEGHERGVNWASFHPNSPLIVSGADDRQVKLWRMNDTKAWE
VDTLRGHMNNISCVMFHAKQDIIVSNSEDKSIRVWDATKRTAIQTFRREHDRFWILSVHP
EMNLLAAGHDSGMIVFKLERERPAFSVSGNSLYYVKDRFLRFYEFSSQKDNQVFPIRKAG
AISLNQSPRTLSFSSTENAILVCSDADGGSYELYVVPRDNGGKADVVPDAKRGGGSAVFV
ARNRFAVLDKSSNQALVKNLKNEIIKKSSLPIATDAIFYAGTGNLLCRAEDKLVIFDLQQ
RLILGEIQVPSVKYIVWSSDMETVALISKHTIVITCKKLVHRCTLHETIRVKSGAWDENG
VFIYATLNHIKYCLPNGDNGVIRTLDVPVYITKVSGNNINCLDRDGKNQVIAVDATEYVF
KLSLLRKKYDNVLTMIRSSQLCGQAIIAYLQQKGFPEVALHFVKDERTRFNLGLESGNIQ
IAVASAKEIDEKDHWYRLGIEALRQGNTSIVEYAYQWTKNFERLSFLYLITGNRLKLSKM
LRIAEMKNDVMGQFHNAMYLGDIPTRVAILENAGQLPLAYITALTHGLIETAERLAAELG
DNVPVIPEGKVHSLLLPPTPLISGGDWPLLRVMRGIFAGRLDVAGRPGHEEEEEEEEEEA
SGAEWGEEDLDIVDADPVIKNGGIDAKVDVVEGNEENGGGWDLEDLDLPPDADIPVAAGN
ARASVFVAPTQGLPVSQIWIKKSSLAGEHAAAGNFETAMRLLNRQLGINNFAPLKQIFLE
LYMGSHTYIHAFTKAPVILTAINAWNESASPNVRDPPSLTFKFSQMDEKLKAAYRTTTEG
RFPEALRLFLNILHIIPLVVVDSRREVDEVKELIEIAKEYVLGLKIEVKRKEIKGDVIRQ
QELSAFFTNCKLQKVHSRLVLTSAMITCFKGGNYATAANFARMLLENSPTENQSRKARQV
LQACGDKKDAHQLNYDYRNPFVVCGATFVPIYRGQKDVSCPYCGARFIPSIQGQQCTICE
IAVVGADASGLLCSPAQGKLLG
NT seq 3669 nt   +upstreamnt  +downstreamnt
atgctgaccaagttcgagaccaagagtaatcgggtaaaggggattagctttcacaggaag
aggccttggataatttctagtcttcatagtggagtgatacagctatgggactatcgcgtg
ggaactcttatcgaccgttttgaagagcacgatggacccgtgcgcggactccattttcat
aaattgcagccgttatttgtttccggaggtgatgattacaaaattaaggtctggaattac
aaaacacgcctttgcttgtttactcttcttgggcaccttgactacattcgtacagtacaa
ttccatgatgaatacccttgggttgttagcgcaagtgatgatcaaactattaggatttgg
aactggcagtctcgtgtctgcatttcagttttgactggccacaatcactttgtgatgtgc
gcgtcattccatccaaaggaggatcttgttgtatctgcttccctggatcagactgtccgt
gtttgggatatcggtgccctgaggaagaaaacagtaaccccagctgatgatactttgcgt
ctgagccagatgaacacagatctatttggcggtgttgatgcagttgtcaaatatatctta
gagggtcatgagcggggagtcaattgggcatcatttcatcctaattcgcctctcattgtc
tctggtgcagatgatcggcaagtaaaattatggagaatgaacgatacaaaggcatgggaa
gtggacacgttgagagggcatatgaacaatatttcttgtgtgatgttccatgcaaaacag
gatattatcgtgtccaattctgaggacaaaagcattcgtgtctgggatgcgactaagcgt
actgctattcagacatttcgccgagagcatgatcgtttttggattctgtctgtgcatcca
gaaatgaatctacttgctgctggccatgacagtggaatgatagtattcaaactagagaga
gagcgtcctgctttttctgtcagtgggaactccctatattatgtcaaagatcggttttta
aggttttatgagttttcatctcagaaggataatcaagtgttcccaataaggaaagctggt
gctataagcttgaatcagagtccaagaacactctctttcagctcaacagagaatgctatc
ttggtatgttctgatgcagatggaggttcttatgagctctatgtagttccaagagacaat
ggtggaaaggcagatgttgttccggatgcgaagagaggaggagggtctgctgtttttgtt
gcccgcaacaggttcgccgtgttagacaagagcagcaatcaggcattagtcaagaatctt
aagaatgagattataaaaaagagttcccttcctattgctacagatgcaatcttttatgct
ggaactggtaatctgttgtgcagggctgaagataagttagtcatctttgatcttcaacag
cgtctcattctaggggaaattcaggtaccttcagtcaaatatattgtttggtcaagcgac
atggaaactgttgcattgatcagcaagcataccatagttattacctgcaagaaacttgtt
caccgttgtacactgcatgagacaatccgtgtgaaaagtggtgcctgggatgagaatggc
gtcttcatctatgcaaccttgaaccacattaagtattgcctccctaatggggacaatgga
gttataaggactctggatgtaccagtatacataactaaggtttctggcaacaatatcaat
tgtttggatcgtgacgggaagaatcaggtgatagcagttgatgctacagagtatgttttt
aagctttcgcttcttaggaaaaaatatgacaatgttttgactatgatcaggagttcacaa
ttgtgtgggcaggctattattgcatacctgcaacaaaaaggatttcctgaggtagctctt
cactttgttaaagatgagagaaccagattcaacttaggtcttgagagtggtaacatccag
atagctgttgcttctgcaaaggagatagatgaaaaggaccattggtacagattaggcatt
gaagcccttcgacaagggaataccagtattgtagaatatgcttatcagtggactaaaaac
tttgaaagattatcttttttgtatctcatcactggtaataggttgaagctatcaaaaatg
ttgaggatcgctgaaatgaagaatgatgttatgggtcagttccacaatgctatgtatctg
ggcgatatcccgacacgcgtggcaatattggaaaatgctggccagttgcctcttgcatat
atcacagctttgactcacgggctcattgaaactgcagaaagacttgccgctgaattgggg
gataacgttcctgtcataccagaaggtaaagtccattctcttttgctgccaccaacccca
ctcatcagtggcggcgactggccattgttgagggtcatgaggggcatttttgcgggcaga
ttagatgttgctggaaggccagggcatgaagaagaagaagaagaagaagaagaagaagct
tctggtgctgaatggggtgaagaagatttggatattgttgatgcggaccctgtaataaaa
aatggtggtatagatgcaaaagttgatgttgttgaaggaaatgaagaaaatggaggagga
tgggatcttgaggatctggacttacctcctgatgcagacattccagtggctgcaggtaat
gcccgagcatccgtttttgttgctcctactcaaggcttgcctgtgagtcaaatttggatt
aaaaaatcatctcttgctggggagcatgctgcagctggaaacttcgaaaccgcaatgcgc
ctacttaaccggcagctaggtataaataattttgctccattgaagcagatatttctggaa
ttatacatgggtagtcatacatatattcatgcttttactaaggctccagttatattaacg
gccattaatgcctggaatgagtctgccagtcctaatgttagggatccgccatctttaaca
ttcaagttctcacaaatggatgaaaaactcaaggctgcttaccgaacaacaacggaaggg
aggttcccagaggctttaagactatttctcaatatcttacacatcatccctcttgttgtt
gtggattctagaagagaggttgatgaagtcaaggagctaattgagatcgctaaagagtat
gttttgggcttgaagattgaagtcaaaagaaaggaaatcaaaggtgatgtgattcggcaa
caagagctttcagcattctttacaaattgtaagcttcagaaggttcactcaaggttggtt
ctcacaagtgccatgatcacttgtttcaagggaggaaattatgctacagcagccaatttc
gcaaggatgcttttagagaatagcccaactgagaatcaatcaagaaaggcaagacaagtt
ctgcaggcctgtggtgataaaaaggatgctcatcagctcaattatgattacagaaatcct
tttgtggtatgtggagccacctttgttccaatataccgtggacaaaaggatgtctcatgt
ccttactgtggggctagatttatcccttccattcaaggacagcagtgcactatttgtgag
attgcggtggtcggcgcagatgcatcaggtcttctctgctctccagctcagggaaaattg
ttaggttag

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