Dendrobium catenatum: 110102089
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Entry
110102089 CDS
T05027
Name
(RefSeq) pre-mRNA-processing protein 40A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
dct
Dendrobium catenatum
Pathway
dct03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110102089
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dct03041
]
110102089
Spliceosome [BR:
dct03041
]
Complex A
U1 snRNP components
U1 related factors
110102089
Complex B
110102089
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
110102089
NCBI-ProteinID:
XP_020685921
LinkDB
All DBs
Position
Unknown
AA seq
1007 aa
AA seq
DB search
MASNPQSSGPQPIRPSVVGSAGPPPNFGPPMPMQFRTVAPPQQAHQFNPVATQQFRPTVQ
GMTGPNVGISGQTQAIPMPYIQQNRSITAGAQSMQLPNNIVPNIGGVGMPLSSSYTFATS
YGQPLNTMNASSQYQPTIHVHAPVAPTSGPSWGTSGTQSLSPLTPLMHATQQPIIIGSVA
GTNVQPGTAEQVASDWQEHTAADGKRYYYNKKTRQSSWAKPFELMTPTERADASTEWKEF
QTPDGRKYYYNKVTKQSKWSIPEELKLAREQAEKAGNQPASAEPVVASIAPAAQSAVVEI
PSSTALNDSTPPATSAVASPVSAPVSNQAASLASGSSSVVDAPAGIASSSSVGIAVPVSV
SDLNIPAASVMASVSGSSEIVTAAADIILGSTKSSNEDSSLPNVVNTTDGASAQDLEEAK
RGMPTAGKINITPLEEKSVDEEPLVYANKQEAKNAFKSLLESANVESDWTWEQAMRVIIN
DKRYGALKTLGERKQAFNEYLGQRKKQDAEEKRNRQKKVREDFTKMLEECNELTSSMKWS
KAITMFENDERFSAVDRPRDREDLFEIYLVELQKKERAKAADDHKHNIIEYRAFLESCDF
IKATTQWRKVQDRLEDDERCSRLEKIDRLEIFQEYIQDLEKEEEEQKKIHREQLRRQERK
NRDAFRKLMEGDIAAGILTAKTHWRDYCMKVKDSSSYLAVASNTAGSTPKDLFEDVAEEL
DKQFHDDKALIKEAMKTGKITLTSAWTFDKLKASISENDMLKGLSEINLKLVFDELLERQ
KEKDEKEAKKRQRLVDNFSDLLYSIKDINASSKWEESRSFFEDSQEYRSIGEESSAREIF
EDYVSLLQEKAKEKERKRDEEKVKKEREREEKEKRREKERKEKEREREKDKLKERSKRDD
VDSENVDASNNHGMKDRKREKDKDRKHRKHHHNAGDDISSEKDEKEESKKSRRHSSEKKK
SRKHGYGTDSDSENRHKRHKKDRDGSRRNGAYEELEDGELGEDGEIR
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atggccagcaatccacaatcttctgggccacagcctataaggccttctgtcgtaggatct
gctggtccccctccaaattttggtcctcccatgcctatgcagtttagaactgttgctcca
cctcaacaagctcatcagttcaatccggtagctacccaacaattcaggccaactgtgcaa
ggcatgactggaccaaatgttggaatttctggtcaaactcaggcgattcctatgccctac
attcaacaaaatagatccatcacagctggtgcgcaaagcatgcagttgccaaataatatt
gtgcctaatataggtggtgtcgggatgcctctttcttcctcgtacacgtttgcaacatct
tatggccaaccgctgaataccatgaatgcctcttcacagtatcagccaacgatccacgtg
catgcacctgttgcacctactagtggaccatcttggggtacatcagggactcaaagctta
tctcctttaacgcccttgatgcacgccacacaacaacctataatcattggttctgtagcg
ggtacaaatgtacaacccggtacggccgagcaggtagcttctgattggcaagaacatact
gctgcagatggaaaaagatattattataacaaaaagaccaggcagtctagttgggcgaaa
ccttttgaactcatgacgcctactgagagggcagatgcgtcgactgagtggaaagaattc
cagactccagacggtcggaaatattactataacaaagtgacaaagcaatcaaaatggtca
attcctgaagagctcaagttagcccgtgagcaggctgagaaggcagggaatcagccagcc
tctgctgaacctgtagttgcttctattgccccagcagctcagagtgctgttgttgagatt
ccttcttcaacagctctaaatgattcaactcccccagcaacaagtgcagtggcaagtcca
gtttcagccccagtttcaaatcaggctgcttcattggcttcaggatcatcatctgttgtt
gatgcacctgctggaatagcttccagttcttccgtgggaattgcagttcctgtgtctgtt
tcagaccttaacatccctgctgcctcagtgatggcttctgtttctggaagctcagagatt
gttactgcggcagcagacatcatacttgggagtacaaagagtagtaatgaggattcatct
ctaccaaatgttgtaaatacaactgatggagcatctgctcaggacctggaggaagcaaaa
aggggcatgcctactgctgggaaaataaatattactcccttggaagaaaaatcagttgat
gaggagcctttggtttatgctaataagcaggaggctaaaaatgcctttaaatcactgctt
gaatctgccaatgttgaatctgattggacttgggaacaggctatgagagtcatcataaat
gacaaaagatacggtgctctaaagaccctgggggagaggaaacaagcgtttaatgagtat
ttgggccaaaggaagaaacaagatgctgaggagaagcgtaataggcagaaaaaagttcgc
gaggattttacaaaaatgttagaggaatgcaatgaactcacttcatccatgaaatggagc
aaagctataaccatgtttgaaaatgatgagcggttcagcgctgttgaccggcctagagat
cgtgaagatctttttgagatctacctcgttgaacttcagaagaaggaaagagcaaaggca
gctgatgatcataaacataatataattgaatatagagcttttctggaatcttgtgacttt
atcaaggcaactacccaatggaggaaagtgcaggatcggttggaggatgatgaaagatgt
tctcgactagaaaaaattgaccgtcttgagatttttcaggagtacattcaagatctagag
aaggaagaagaggagcaaaagaagatacatagggagcaattacggcgccaagagcgaaaa
aatcgtgatgcattccgcaagttgatggaaggtgacattgctgctggcattcttacagct
aagacacactggcgtgattattgtatgaaggtcaaggattcctcatcatacctggcagta
gcatcaaacactgctggctcaacaccaaaagatctatttgaagatgttgcagaggagctt
gacaagcagtttcatgatgacaaggcactaatcaaagaggctatgaagactggaaaaatt
actttgacatcagcatggacatttgataagctgaaggcttcaatatctgagaacgatatg
ttgaaaggattatctgagatcaacttaaagctcgtctttgatgaactcttggagcgtcag
aaagaaaaagatgagaaagaagccaaaaagcgccaacgacttgtagataatttttccgac
ctgctttattcaatcaaggatataaatgcatcttcaaaatgggaggaatctaggtcattt
tttgaagacagtcaagaatatagatcaattggagaagagagctctgcaagggagattttt
gaggattatgtttctcttttgcaagaaaaggcaaaagaaaaggagcgcaaaagagatgaa
gagaaggttaaaaaagagagggaaagagaagagaaggaaaaaaggagggagaaagaaaga
aaggaaaaagagagagaacgtgaaaaggacaaattgaaggaacggtcaaaaagggatgat
gtagatagtgaaaatgttgatgcctccaataaccatggaatgaaggataggaagcgtgaa
aaagacaaggataggaagcatagaaaacatcatcacaatgcgggagatgatataagctct
gagaaagatgagaaagaagagtccaagaagtcaagaaggcatagtagtgagaagaaaaaa
tctagaaagcatggatacggcactgattccgacagtgaaaaccggcacaagagacataag
aaagatagagatggatcccgcagaaatggtgcctatgaggagcttgaagatggtgagctt
ggagaggatggagaaattcgctag
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