Dendrobium catenatum: 110102950
Help
Entry
110102950 CDS
T05027
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
dct
Dendrobium catenatum
Pathway
dct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110102950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dct03019
]
110102950
03036 Chromosome and associated proteins [BR:
dct03036
]
110102950
Enzymes [BR:
dct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110102950
Messenger RNA biogenesis [BR:
dct03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
110102950
mRNA degradation factors
5'-3' decay
Decapping complex
110102950
Chromosome and associated proteins [BR:
dct03036
]
Eukaryotic type
Gene silencing
piRNA pathway
110102950
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
110102950
NCBI-ProteinID:
XP_020687132
LinkDB
All DBs
Position
Unknown
AA seq
484 aa
AA seq
DB search
MNYRARYPPGNGSGRGGNSSNFYASRPQPQPQQQFVQGNLSASQHGQQLQQQQRWLRRNE
IGNDSGNREEVGEVQSYGSNHSIQDWKSHLNIPAPDTRYQTEDVTATKGNEFEDYFLKRE
LLMGIYEKGFESPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPALEKIDQAKNVIQ
VVILVPTRELALQTSQVCKELGKYLKIQVMVTTGGTSLKDDIMRLYQPVHLVVGTPGRIL
DLARKDICVLKDCSMLIVDEADKLLSPEFQPSIEQLIGFLPAKRQILLFSATFPVTVKGF
KDRYLSNPFTINLMDELTLKGITHYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRV
ELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVI
NFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELAAEIKQIPPQIDQA
IYCK
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgaattatcgagcgaggtatcctcccggaaacggcagtggacgcgggggaaacagctct
aatttttatgcaagcaggcctcagccgcagccgcagcagcagttcgtgcaggggaatctt
tcagctagccagcatggccagcaattgcagcagcagcaacggtggttgcgaaggaatgag
attggaaacgactcaggaaaccgagaggaagtcggagaggttcaatcatatggcagcaat
catagcattcaagattggaaatcacatttaaatatacccgcacctgatacacgttaccag
accgaggatgtaactgcaactaaaggaaatgaatttgaagattattttttgaagagagag
ctactcatgggtatctatgagaagggatttgaaagtccttcccccattcaagaggaaagt
attccaattgctctaactggtagggatattcttgctagagctaaaaatggaactgggaag
acagctgccttctgcattcctgctctagagaagattgatcaagcaaaaaatgtcatccaa
gttgtgatactagttcctacacgagaattagctctccagacatcacaagtttgcaaggag
cttggaaagtatttgaagattcaggttatggtcaccactggaggaaccagtttgaaggat
gacattatgcggttatatcagcctgttcatttagttgttggaacgccaggtcgcatactt
gatcttgctagaaaggatatttgtgttcttaaagattgctccatgcttattgtggatgag
gctgacaaactcctgtctccggagtttcaaccttcaattgagcagttgattggatttctt
cctgcaaaaaggcagatattgttgttttcggcaacctttcctgtgactgtcaagggtttt
aaagacagatatctctcaaaccccttcacaattaatcttatggatgagcttacccttaag
ggtattacacactactatgcttttgtggaagaaaggcagaaggttcactgcctgaatact
cttttctctaagcttcaaataaaccagtctatcatattttgcaactctgttaaccgggta
gaattgctggcgaagaaaattacagagcttggctattcttgcttttatattcatgccaaa
atgttgcaggaccatcggaatcgtgttttccatgatttccgaaatggtgcatgcaggaat
cttgtttgcaccgatttatttaccagggggattgacattcaagctgttaatgttgttatc
aactttgatttccccaagaactcggagacatatctacatagggttggtcgctcaggaagg
tttggtcatcttggtctagctgtaaatttgatcacttatgaggaccggttcaacttatat
agaattgagcaagaactagcagctgaaatcaagcaaattccaccacaaattgaccaagct
atatactgcaaatga
DBGET
integrated database retrieval system
