Dendrobium catenatum: 110104304
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Entry
110104304 CDS
T05027
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
dct
Dendrobium catenatum
Pathway
dct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110104304
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dct03019
]
110104304
03036 Chromosome and associated proteins [BR:
dct03036
]
110104304
Enzymes [BR:
dct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110104304
Messenger RNA biogenesis [BR:
dct03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
110104304
mRNA degradation factors
5'-3' decay
Decapping complex
110104304
Chromosome and associated proteins [BR:
dct03036
]
Eukaryotic type
Gene silencing
piRNA pathway
110104304
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Aldedh
DS
Motif
Other DBs
NCBI-GeneID:
110104304
NCBI-ProteinID:
XP_020689006
LinkDB
All DBs
Position
Unknown
AA seq
486 aa
AA seq
DB search
MNPRGRYPPGIGNGRGGSVEPNVNFYPRGHQLQQHYVERNPAQSQQNQQFQHQQQQWLRR
NQMERHSGSNELVKPVPSDAIDSSSQDWKAQLRLPAADTRYKTEDVTATKGNDFEDYFLK
RELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPALEKIDQDKNV
IQVVILVPTRELALQTSQVCKELAKHLKVQVMVTTGGTSLKDDVMRLYQPVHLIAGTPGR
ILDLAKKGVCVLQDCSMLIMDEADKLLSPEFQPSIEQLIHFLPENRQILLFSATFPVTVK
DFKDRYLRKPYIINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVN
RVELLAKKITELGFSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNV
VINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPSQID
QAIYCS
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgaaccctagaggaagatatcctccaggaatcggcaatggccgcggaggcagcgttgag
ccgaatgtcaacttttatccacggggacatcagcttcagcagcactacgtcgagagaaat
cccgcacagagccagcaaaatcaacaattccagcatcagcagcagcaatggctaaggagg
aatcagatggaaagacattctggttctaatgagctggtgaaaccagttccctctgatgcc
attgattccagctcacaagattggaaagctcaattaagattaccagctgcagacacacgc
tacaagacagaggatgtaacagcaaccaaaggaaatgattttgaagattactttctgaag
agggaattgcttatgggtatatatgagaaaggatttgaaaggccttcacctattcaagaa
gaaagcatccctattgctcttaccggacgtgacattcttgctagagccaaaaacgggaca
gggaaaactgctgctttctgcattccagcattagaaaaaattgatcaagacaagaatgtt
atccaagttgtcatactagttcccacccgtgagttggctctacaaacatctcaagtttgt
aaggagctggcgaagcacttgaaggttcaggttatggttacaactggaggaacaagctta
aaagatgatgtcatgcgtttgtatcaaccagtccacctaattgctggaacacctggtcga
atcctagatcttgcaaaaaagggtgtttgtgtcttgcaggactgttcaatgctcattatg
gacgaggcagacaagcttctgtctccagaattccagccctcaattgagcagctaattcat
tttcttcctgaaaatagacagatattactgttttcggctacttttcctgtgacagtcaag
gacttcaaagaccgatatctgcgaaagccttacataattaaccttatggatgagctcact
ctcaagggaataacacaatattacgcttttgtagaagaaaggcagaaggtccactgcttg
aatactcttttctcaaagcttcaaatcaaccagtctattatattttgcaactctgttaac
cgtgtagaattattggctaagaaaattactgagcttggtttttcatgcttctacattcat
gctaaaatgttgcaagaccatcggaatcgtgtattccatgacttccgtaatggtgcatgc
agaaatcttgtctgtacagatctatttacaaggggaattgatattcaagcagttaatgtt
gtcattaattttgattttccaaagaactcggaaacatatctacatagggttggtcgctca
ggaaggtttggccaccttggtttagctgtcaatctgatcacctatgaagaccgtttcaac
ctttataggattgaacaagagcttgggactgaaataaagcagattccttcacaaatagat
caagctatatactgcagttga
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